Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b21r
         (767 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    26   0.38 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   6.2  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   8.2  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 253 IKYFWCFIVVFAVHIL 206
           I YF+C  ++F VH+L
Sbjct: 146 IYYFYCAFIIFTVHLL 161



 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 253 IKYFWCFIVVFAVHILDVFFLING 182
           I YF+C  + F VH+L  F L +G
Sbjct: 56  IYYFYCVSITFNVHLL--FLLCSG 77



 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 253 IKYFWCFIVVFAVHIL 206
           I +F+C  ++F +H+L
Sbjct: 166 IYHFFCAFIIFTMHLL 181



 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 253 IKYFWCFIVVFAVHILDVFFLI 188
           I YF+   ++F +H+L    LI
Sbjct: 212 IYYFYSAFIIFTIHLLFYCVLI 233


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 49  IRI*HRAIYLSAFKNLFTQKLLHFTLLLG 135
           IR  H+A+   +   L +++L  +TL+LG
Sbjct: 670 IRTDHQALKFLSRCRLLSERLTRWTLILG 698


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 185 IYKKEHIQYMYRKYN 229
           +YK+ H Q+ Y K N
Sbjct: 230 LYKRPHDQWAYEKLN 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,061
Number of Sequences: 336
Number of extensions: 2721
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)