Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b21r
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   3.9  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    26   5.2  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   6.8  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   6.8  

>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 485 FNVLNMPTTNWICS 526
           FN LN+P T WIC+
Sbjct: 90  FNTLNVPITLWICA 103


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +3

Query: 93  FIYTKIITLHIVTRI--SDITLISYSFFF-KILPFIRKNTSNICTANTTMKHQKYLIASL 263
           F Y+ I  L IV     SD  L+     + +I+P+++KN  +  T    +   +  + S 
Sbjct: 65  FDYSSIYILSIVMPATPSDEKLLHIDLLYTQIVPYLQKNNDDAPTIRCALNCTQEFLLSF 124

Query: 264 STKKKSL 284
           S + K L
Sbjct: 125 SNESKEL 131


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 236 LHCCICGTYIG 204
           +HCC C TYIG
Sbjct: 70  IHCCRCHTYIG 80


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 279 FFFLLIETQLNIFGASLLYLRYIYWMCSFL 190
           FF+L +    +++GA      +++W CS+L
Sbjct: 6   FFYLALWVIQSVYGAWDWAKNWVFWTCSYL 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,688
Number of Sequences: 5004
Number of extensions: 42772
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)