Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b21r
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14952| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_3393| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.012)           29   4.1  
SB_50520| Best HMM Match : zf-DNL (HMM E-Value=3.4)                    28   7.2  
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)                 28   9.5  

>SB_14952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
 Frame = +3

Query: 99  YTKIITLHIVTRISDITLISYSFFFKI------LPFIRKNTSNICTANTTMKHQKYLIAS 260
           Y   +  H  TR     L++YSF  K         F RK   ++ T + TMK+Q Y + +
Sbjct: 185 YQYSLVTHSFTRKYQYPLVTYSFTRKYQYSLVTYSFTRKYQYSLVTHSFTMKYQ-YSLVT 243

Query: 261 LSTKKKSLNNFLIYSF 308
            S  +K   + + YSF
Sbjct: 244 YSFTRKYQYSLVTYSF 259



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
 Frame = +3

Query: 99  YTKIITLHIVTRISDITLISYSFFFKI------LPFIRKNTSNICTANTTMKHQKYLIAS 260
           Y   +  H  TR    +L++YSF  K         F RK   ++ T + T K+Q Y +  
Sbjct: 341 YQYSLVTHSFTRKYQYSLVTYSFTRKYQYSLVTYSFTRKYQYSLVTHSFTRKYQ-YSLVK 399

Query: 261 LSTKKKSLNNFLIYSFIYIQKKRYYIFRF 347
            S  KK   + + YSF   +K +Y + ++
Sbjct: 400 YSFTKKYQYSLVKYSF--TRKYQYSLVKY 426



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
 Frame = +3

Query: 99  YTKIITLHIVTRISDITLISYSFFFKI------LPFIRKNTSNICTANTTMKHQKYLIAS 260
           Y   +  H  TR    +L++YSF  K         F RK   ++ T + T K+Q Y + +
Sbjct: 55  YQYSLVTHSFTRKYQYSLVTYSFTRKYQYSLVTYSFTRKYQYSLVTYSFTRKYQ-YSLVT 113

Query: 261 LSTKKKSLNNFLIYSF 308
            S  +K   + + YSF
Sbjct: 114 YSFTRKYQYSLVTYSF 129



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
 Frame = +3

Query: 36  HGM*HTYLTPGYLFIGFQKFIYTKIITLHIVTRISDITLISYSFFFKI------LPFIRK 197
           H     Y  P   +   +K+ Y+  +  +  TR    +L+++SF  K         F RK
Sbjct: 192 HSFTRKYQYPLVTYSFTRKYQYS--LVTYSFTRKYQYSLVTHSFTMKYQYSLVTYSFTRK 249

Query: 198 NTSNICTANTTMKHQKYLIASLSTKKKSLNNFLIYSF 308
              ++ T + T K+Q YL+ + S  +K   + + YSF
Sbjct: 250 YQYSLVTYSFTRKYQ-YLLVTYSFTRKYQYSLVTYSF 285


>SB_3393| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.012)
          Length = 626

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -2

Query: 256 AIKYFWCFIVVFAVHILDVF---FLINGNILKKKLYDINVISLI 134
           A  YF  FI+V +  +L++F    + N N LKKK  +IN + ++
Sbjct: 66  AYAYFVVFIIVGSFFVLNLFVGVIIDNFNTLKKKYEEINSMGML 109


>SB_50520| Best HMM Match : zf-DNL (HMM E-Value=3.4)
          Length = 277

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
 Frame = +3

Query: 237 HQKYLIASLSTKKKSLNN--FLIYSFIYIQKKRYYIFRFMV*NIILSNTYNILNIFFSC- 407
           H +  +  +S ++  L+   F I + I++Q   + + R ++  II  N Y+ +++FF+C 
Sbjct: 164 HARGEVKEISRREMLLHGDIFGILTGIFMQDGPFLVLRLVL--IIKYNLYSEMHLFFTCK 221

Query: 408 NVIAIHVI 431
           N IA+ ++
Sbjct: 222 NAIALSLL 229


>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
          Length = 672

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -2

Query: 265 DRDAIKYFWCFIVVFAVHIL--DVFFLINGNILKKKLYDINVI 143
           ++D I+ F+  I VF +      ++F+I  N+LK   Y +N++
Sbjct: 547 EKDLIRMFYIIIFVFVLFYFPYQIYFMIENNVLKDWYY-VNLL 588


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,073,711
Number of Sequences: 59808
Number of extensions: 272759
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)