Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b21r
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49909-15|CAF31470.1|  697|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z49909-14|CAA90116.2|  717|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>Z49909-15|CAF31470.1|  697|Caenorhabditis elegans Hypothetical
           protein C14A4.12b protein.
          Length = 697

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
 Frame = +3

Query: 72  LFIGFQKFIYTKIITLHIVTRISDITLISYSFFF---KILPFIRKNTSNICTANTTMKHQ 242
           +F+GF  F     ++L  V   +  T   Y  F    + LPF+    +     +   K  
Sbjct: 362 IFVGFSAFFLIISLSLINVNLYALFTKQFYKIFHTSEQKLPFLTAFLALFTGLSVLSKFN 421

Query: 243 KYLIA-SLSTKKKSLN-NFL-IYSFIYIQKKRYYIFRFMV*NIIL-SNTYN 383
              IA SL     S+N  +L I+SFIY+QK  Y+I       ++L S+TY+
Sbjct: 422 FITIAISLVLGIFSINATYLHIFSFIYLQKNGYFIDGTSAEFLVLPSDTYD 472


>Z49909-14|CAA90116.2|  717|Caenorhabditis elegans Hypothetical
           protein C14A4.12a protein.
          Length = 717

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
 Frame = +3

Query: 72  LFIGFQKFIYTKIITLHIVTRISDITLISYSFFF---KILPFIRKNTSNICTANTTMKHQ 242
           +F+GF  F     ++L  V   +  T   Y  F    + LPF+    +     +   K  
Sbjct: 382 IFVGFSAFFLIISLSLINVNLYALFTKQFYKIFHTSEQKLPFLTAFLALFTGLSVLSKFN 441

Query: 243 KYLIA-SLSTKKKSLN-NFL-IYSFIYIQKKRYYIFRFMV*NIIL-SNTYN 383
              IA SL     S+N  +L I+SFIY+QK  Y+I       ++L S+TY+
Sbjct: 442 FITIAISLVLGIFSINATYLHIFSFIYLQKNGYFIDGTSAEFLVLPSDTYD 492


>Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical
           protein F08A10.2 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +3

Query: 111 ITLHIVTRISDITLISYSFF-FKILPFIRKNTSNICTANTTMKHQKYLIASLSTKKKSLN 287
           IT H    I     I+  F  F IL FI  NT  I TA   +    YL++S+ T  ++  
Sbjct: 56  ITSHFYKMIKWFHAIALFFIIFLILVFISSNTKIITTAVPILILIVYLMSSVITSIQNSL 115

Query: 288 NFL--IYSFIYI 317
            FL  +Y FI +
Sbjct: 116 LFLLALYRFIIV 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,165,574
Number of Sequences: 27780
Number of extensions: 229012
Number of successful extensions: 666
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)