Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b21f
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 257 4e-69
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 247 6e-66
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 41 9e-04
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 40 0.001
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 29 3.9
07_03_0894 + 22362717-22363514 29 3.9
03_02_0243 - 6744164-6744415,6744518-6745135 29 3.9
02_01_0516 + 3727742-3727936,3729115-3729192,3729292-3729552,372... 29 3.9
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 28 5.1
10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175 28 6.8
10_02_0098 + 5286827-5287019,5287380-5287476,5287872-5287992,528... 27 8.9
08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012... 27 8.9
06_01_0244 - 1844161-1844241,1844356-1844394,1844510-1844617,184... 27 8.9
02_03_0182 + 16101861-16101955,16102226-16102372,16102465-161025... 27 8.9
01_05_0655 - 23972488-23973152,23973193-23973241,23973883-239739... 27 8.9
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043... 27 8.9
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 257 bits (630), Expect = 4e-69
Identities = 123/161 (76%), Positives = 136/161 (84%)
Frame = +1
Query: 130 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 309
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DGT R GQVLEV G KAVVQVFEGTSG
Sbjct: 59 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSG 118
Query: 310 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRI 489
ID K T +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G INP R
Sbjct: 119 IDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERT 178
Query: 490 YPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQ 612
YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQ
Sbjct: 179 YPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQ 219
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 247 bits (604), Expect = 6e-66
Identities = 124/170 (72%), Positives = 136/170 (80%), Gaps = 9/170 (5%)
Frame = +1
Query: 130 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 309
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DGT R GQVLEV G KAVVQVFEGTSG
Sbjct: 19 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSG 78
Query: 310 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQ---------G 462
ID K T +FTG++L+TPVS DMLGRVFNGSGKPID GPPIL E +LDI G
Sbjct: 79 IDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEAYLDISDFDIGFAGAG 138
Query: 463 QPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQ 612
INP R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQ
Sbjct: 139 SSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQ 188
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 40.7 bits (91), Expect = 9e-04
Identities = 24/90 (26%), Positives = 48/90 (53%)
Frame = +1
Query: 145 VSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSGIDAKN 324
V V+GP+V+ D + E+V++ D + G+++ + G A +QV+E T+G+ +
Sbjct: 60 VLAVSGPVVVADGMGGAAMYELVRVG-NDNLI--GEIIRLEGDSATIQVYEETAGLMVND 116
Query: 325 TLCEFTGDILRTPVSEDMLGRVFNGSGKPI 414
+ T L + +LG +F+G +P+
Sbjct: 117 PVLR-TRKPLSVELGPGILGNIFDGIQRPL 145
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Frame = +1
Query: 118 SQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFE 297
S+ Y V V+GP+V+ D + E+V++ D + G+++ + G A +QV+E
Sbjct: 13 SEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVG-HDNLI--GEIIRLEGDSATIQVYE 69
Query: 298 GTSGIDAKNTLCEFTGDILRTPVSEDM----LGRVFNGSGKPI 414
T+G+ + + + P+S ++ LG +F+G +P+
Sbjct: 70 ETAGLMVNDPVLRTRKVMPAQPLSVELGPGILGNIFDGIQRPL 112
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 106 WRLPGHVPWSPGRERSPLPFF 44
WR+ GH+P G R P+ FF
Sbjct: 252 WRVQGHLPQRQGPRRVPIDFF 272
>07_03_0894 + 22362717-22363514
Length = 265
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 443 SSAKIGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDV 300
SSA L+ GLP + R +++ E GVR + ++S F A P +
Sbjct: 56 SSAAKADALAAGLPRAVAVRADVADEAGVRSLFDA-AESAFGAGAPHI 102
>03_02_0243 - 6744164-6744415,6744518-6745135
Length = 289
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -1
Query: 215 CTISENLGNLTSSKMTRGPFTPDTVL*VSLG 123
C ++E++ L S +T P TPDTVL VS G
Sbjct: 23 CEVNESM--LDSVTVTHAPLTPDTVLEVSGG 51
>02_01_0516 +
3727742-3727936,3729115-3729192,3729292-3729552,
3729921-3730238,3730527-3730685,3730768-3730961,
3731644-3731647
Length = 402
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 157 NGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQV 291
NGP+ + + KF ++ + KLAD T G + G +V V
Sbjct: 321 NGPMGVFEFEKFAAGTDAIAKKLADLTTTKGATTIIGGGDSVAAV 365
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = -3
Query: 444 VLGQDWGTLVDGFAGTVEHATQHVFRDRCTKNVTRELAECVLR 316
VLGQDW + DG V + H R RC RE E V R
Sbjct: 32 VLGQDWKQIEDGRRRPVAVSYSHGRRLRCIAEGRREEEEEVGR 74
>10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175
Length = 294
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 404 PEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPLTSS 255
P P P S TG P S PD+P TWTT L+ +T++
Sbjct: 202 PPPPPPPPPPSDATGGEVSIPCFPFSPLPFIEPDLPELTWTTDLDDITAT 251
>10_02_0098 +
5286827-5287019,5287380-5287476,5287872-5287992,
5288458-5288511,5288868-5288918,5289004-5289099,
5289709-5289807,5289989-5290111,5290666-5290809,
5290902-5290973,5291053-5291128,5291208-5291350,
5291453-5291561,5291629-5291816,5292045-5292134,
5292256-5292438,5293187-5293360,5293466-5293537
Length = 694
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -3
Query: 468 GLTLDVQEVLGQDWGTLVD--GFAGTVEHATQ 379
G +D+ EV+G D+G VD GF +E A Q
Sbjct: 165 GYPVDLTEVMGVDYGLSVDREGFDAAMEEARQ 196
>08_02_0805 +
21400345-21400701,21400797-21400975,21401223-21401271,
21401310-21401390,21401988-21402605
Length = 427
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 329 SASSRVTFFVHRSL--KTCWVACSTVPANPSTRVPQSWPRTSWTSRVSPS 472
SA R +++ +SL + C VA T+P + ++ Q P T+W RV+ S
Sbjct: 164 SAGDRGVWWI-KSLFGRVCLVASHTLPQFATPKLWQDSPPTNWVPRVNGS 212
>06_01_0244 -
1844161-1844241,1844356-1844394,1844510-1844617,
1844638-1844685,1845058-1845111,1845214-1845268,
1845442-1845522,1846238-1846615,1847196-1847401
Length = 349
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -3
Query: 216 LYDLRELGELDFIQDDERTVYTRHSLVSEPGLGNEVPGDCQD 91
+YD E+ E + + +E+ + + + EPGL ++ GD ++
Sbjct: 299 IYDTEEMSESEDEEKEEQRIRKLYEDLEEPGLHEKLFGDVEE 340
>02_03_0182 +
16101861-16101955,16102226-16102372,16102465-16102515,
16102617-16102782,16103055-16103283,16104067-16104638
Length = 419
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 111 VPGDCQDMFLGRLGVRDHLCHFSVFTYRQS 22
+ GD D+ +GRL + DHL HF + R S
Sbjct: 201 IAGD--DLAVGRLPINDHLVHFFLSRRRHS 228
>01_05_0655 -
23972488-23973152,23973193-23973241,23973883-23973940,
23974184-23974215,23975961-23976040,23976509-23977898
Length = 757
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 436 AEDF---LDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAA 582
AEDF L + G P+ P +P G+S DV + + +K + AA
Sbjct: 216 AEDFAGNLQLCGSPLPPCKSFFPSPSPSPGVSPADVPGAASSSKKRRLSGAA 267
>01_05_0627 +
23802235-23802853,23803357-23803430,23804207-23804364,
23804640-23804964
Length = 391
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = +2
Query: 323 THSASSRVTFFVHRSLKTCWVACSTVPANPSTRVPQSWPRTSWTSRVSPSTHGHVSTQRR 502
T ++SSR + RS VA ++ P PST SW +T ST RR
Sbjct: 67 TRTSSSRPAPWWRRSRMAAAVAVTSSPPRPSTSPRLSWSSWEADELEEAATAPRPSTSRR 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,217,170
Number of Sequences: 37544
Number of extensions: 460978
Number of successful extensions: 1360
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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