Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b20r
         (782 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.8  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   6.4  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   6.4  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   6.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   6.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.4  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 340 LSCQFYQSEEVTGVTR*ESHTPSLARSPASVV 245
           +SC  YQ+ E   V   ES  P +    A+ V
Sbjct: 369 VSCTHYQNPEYISVVNPESPYPQIGSERATPV 400


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 505 MMRFLRSCLYRNKHVPDSAHVSRHL 431
           +  ++   L + K  PD A + RHL
Sbjct: 43  LKNYVNCLLEKGKCTPDGAELKRHL 67


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 483 HDLKNLIIQGRAEEEINDLE 542
           +D K+   QG+A+ EI DLE
Sbjct: 30  YDSKSHFRQGQAKFEITDLE 49


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -3

Query: 261 HRQVWFRNSPADSCPSWYWYCV 196
           HR  +FR     +   W+W+ V
Sbjct: 192 HRLAYFREDLGINLHHWHWHLV 213


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 342 KDNSASNGSGDFLAALHTQTNMTVVVANGNK 434
           K NS +NGS D +      ++    + NG+K
Sbjct: 279 KPNSTTNGSPDVIKVEPELSDSEKTLCNGSK 309


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 134 ELTCSNPVHQP 166
           E TC  PVH+P
Sbjct: 91  EPTCDEPVHRP 101


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,262
Number of Sequences: 336
Number of extensions: 4090
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)