Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b20r
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   322   3e-89
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    29   0.57 
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    28   1.3  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   9.3  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  322 bits (792), Expect = 3e-89
 Identities = 141/216 (65%), Positives = 179/216 (82%)
 Frame = -1

Query: 653 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 474
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 473 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 294
           KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTA 146

Query: 293 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTL 114
           +G PHTVP KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGST TL
Sbjct: 147 LGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTL 206

Query: 113 GNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSEF 6
           GNF              LTP+LW + P  ++P  E+
Sbjct: 207 GNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEEY 242


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 28/118 (23%), Positives = 50/118 (42%)
 Frame = -1

Query: 479 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWG 300
           V  QTR G+         +G+ NG  G G   ++  + A + +   A  +++ + R Y  
Sbjct: 235 VVNQTRKGKIASMYVLTVVGNRNGVAGFGEGKAESYSLAYKQSCGRAVKNMVYIPR-Y-- 291

Query: 299 NKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGS 126
                  TV   +  K  +V + L   P G G+   P+  ++ + AG++D      GS
Sbjct: 292 ----DKRTVYGVIHKKFHAVRLTLRSRPAGFGLRCNPILHEICRCAGIKDISGEILGS 345


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 544 NSRSLISSSARP*MMRFLRSCLYRNKHVPDSAHVSRH 434
           +SR+ I S+     +++L S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -1

Query: 650 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 528
           +D+ EW P++    LV   ++   E  +++    K++E+ID
Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELID 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,126,753
Number of Sequences: 5004
Number of extensions: 66670
Number of successful extensions: 196
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)