Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b20r
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 331 4e-91
07_01_0756 + 5819367-5820038,5820847-5821005 324 5e-89
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 108 6e-24
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031 29 3.2
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 4.2
01_06_0210 - 27559090-27559239,27560445-27560567,27561069-275611... 28 7.3
11_01_0395 + 2999855-2999920,3000605-3002191 28 9.6
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 331 bits (813), Expect = 4e-91
Identities = 149/216 (68%), Positives = 181/216 (83%)
Frame = -1
Query: 653 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 474
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96
Query: 473 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 294
KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 156
Query: 293 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTL 114
IG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TL
Sbjct: 157 IGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL 216
Query: 113 GNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSEF 6
GNF +LTPD WRD KSP+ E+
Sbjct: 217 GNFVKATFDCLMKTYGFLTPDFWRDTKFVKSPFQEY 252
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 324 bits (796), Expect = 5e-89
Identities = 147/216 (68%), Positives = 180/216 (83%)
Frame = -1
Query: 653 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 474
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99
Query: 473 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 294
KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159
Query: 293 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTL 114
IGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TL
Sbjct: 160 IGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTL 219
Query: 113 GNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSEF 6
GNF +LTPD WR+ K+P+ E+
Sbjct: 220 GNFVKATFDCLMKTYGFLTPDFWRETRFIKTPFQEY 255
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 108 bits (259), Expect = 6e-24
Identities = 58/111 (52%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = -1
Query: 434 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVT 258
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56
Query: 257 GKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 105
K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST TL NF
Sbjct: 57 DKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNF 107
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = -1
Query: 506 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 327
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 326 LPV 318
+ V
Sbjct: 231 VTV 233
>02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031
Length = 538
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 156 YTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLA 269
Y ++++L+++W H+ R + PD G + DLA
Sbjct: 410 YPINVERLIQHWMAHDFIPAREEDNPDMVGKEIFNDLA 447
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 372 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 488
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>01_06_0210 -
27559090-27559239,27560445-27560567,27561069-27561128,
27562045-27562068,27562313-27562653,27562684-27563731
Length = 581
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -2
Query: 619 NSAVLFAK-EKSTNSRAFTCFLYQSKNSRSLISSSARP*MMRFLRSCLYRNKHVPDSAHV 443
N AV+ A K RAF +YQS +R + S +P L CL + ++ +AHV
Sbjct: 381 NDAVVTALCSKGEVVRAFQ--VYQSMRTRGI---STKPTTFHLLVECLSKKNNLEKAAHV 435
Query: 442 SRHLL 428
R +L
Sbjct: 436 VRDML 440
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -1
Query: 566 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 447
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,610,409
Number of Sequences: 37544
Number of extensions: 497542
Number of successful extensions: 1305
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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