Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b20r
(782 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 364 e-101
SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11) 32 0.46
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 32 0.46
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 29 3.2
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 29 4.2
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_52533| Best HMM Match : rve (HMM E-Value=2) 29 4.2
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 29 4.2
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 4.2
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 5.6
SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4) 29 5.6
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 7.4
SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 7.4
SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_45835| Best HMM Match : TLD (HMM E-Value=0.4) 28 9.8
SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24) 28 9.8
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 364 bits (896), Expect = e-101
Identities = 170/210 (80%), Positives = 182/210 (86%)
Frame = -1
Query: 635 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 456
WVPVTKLGRLV++ KI LE IYLFSLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAG
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAG 67
Query: 455 QRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 276
QRTRFKAFVAIGD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 68 QRTRFKAFVAIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHT 127
Query: 275 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 96
VPCKVTGKCGS VRLIPAPRGTGIVSAPVPKKLLQMAG++DCYTS RG T TLGNF
Sbjct: 128 VPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQTATLGNFAKA 187
Query: 95 XXXXXXXXXXYLTPDLWRDIPLTKSPYSEF 6
YLTPD+W++ TK+PY EF
Sbjct: 188 TFAAISETYAYLTPDMWKETVFTKTPYQEF 217
>SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 33.1 bits (72), Expect = 0.26
Identities = 24/110 (21%), Positives = 43/110 (39%)
Frame = -1
Query: 332 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQ 153
S++ R +G K +P + C V G GS++ RL A G +S+ + + + +
Sbjct: 472 SIISRRSSSFGRKGSRPSCL-CSVAGAQGSISSRLCSAISRQGSISSRLCSAISRQGSIS 530
Query: 152 DCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSEFK 3
SA G++ + + D+ + P SEFK
Sbjct: 531 SRLCSAISRQGSISSRLSSAISRRGSMSSRSSSDVGIQGSILSRPNSEFK 580
>SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)
Length = 733
Score = 32.3 bits (70), Expect = 0.46
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -1
Query: 425 IGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLP-VRRGYWGNKIGKPHTVPCKVTGKC 249
IGD+ G + V+ +K + G++ L+ P +RRG G++ KPH+ P ++ +
Sbjct: 137 IGDSGGIDTMDVR-NKATGSVAWGSVTKRPLTSTPDIRRGQTGSEFRKPHSEPRFMSARF 195
Query: 248 GS 243
GS
Sbjct: 196 GS 197
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 32.3 bits (70), Expect = 0.46
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 333 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 512
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292
Query: 513 RAEEEI 530
R ++E+
Sbjct: 293 RNQDEL 298
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 32.3 bits (70), Expect = 0.46
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 333 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 512
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576
Query: 513 RAEEEI 530
R ++E+
Sbjct: 577 RNQDEL 582
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +3
Query: 360 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 491
N G LA + N+ +V NG K + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 506 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 393
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 506 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 393
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 506 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 393
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 506 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 393
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 95 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 506 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 393
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 506 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 393
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = -1
Query: 326 LPVRRGYWGNKIG--KPHTVPCKVTGKCGSVTVRLIPAPRGT 207
LP GYW N G P PC V C + + P P GT
Sbjct: 3355 LPCPAGYWCNIKGLADPSISPCPVGHYCLNAIDKPTPCPNGT 3396
>SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)
Length = 394
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 150 ILYTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLSYLV 299
+LYT + + RN++ +NT T R Q + TT+ L D LS LV
Sbjct: 36 LLYTRNSTRTARNYQYYNTRQTLCR-QRETINTTIHAKLYTDSEKLSILV 84
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 150 ILYTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLSYLV 299
+LYT + + RN++ +NT T R Q + TT+ L D LS LV
Sbjct: 285 LLYTRNSTRTARNYQYYNTRQTLCR-QRETINTTIHAKLYTDSEKLSILV 333
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 129 TTS*RVAI-LYTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLSYLV 299
T S +++I LYT + + RN++ +NT T R Q + TT+ L D LS LV
Sbjct: 136 TDSEKLSIPLYTRNSTRTARNYQYYNTRETLCR-QRETINTTIHAKLYTDSEKLSILV 192
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 129 TTS*RVAIL-YTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLSYLV 299
T S +++IL YT + + RN++ +NT T R Q + TT+ L D LS L+
Sbjct: 183 TDSEKLSILVYTRNSTQTARNYQYYNTRKTL-RRQRETINTTIHAKLYTDSEKLSILL 239
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 7.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 456 TAHTFQGICCHWRQQRSYW 400
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -1
Query: 254 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 111
+CG+ + + R ++ P+P L ++ +Q C + STGT G
Sbjct: 591 RCGTHALTKTVSERVPDVLKHPLPPPLQELQELQVCDPPSTSSTGTTG 638
>SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 822
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 332 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 192
+V RG+W + + H + C V +CG + L AP +VS+
Sbjct: 303 TVFTTYRGFWNYALVRKHWLKCVVNLQCG-IAKHLSQAPSNKLLVSS 348
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 458 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 369
G++ + K F+A+G NGH+ C ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385
>SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = +1
Query: 148 QSCTPAI*RSFLGTGADTIPVPRGAGISRTVTEPHLPVTLQGTVCGFP 291
+SC PA + G G D G + TEPH QG P
Sbjct: 144 RSCGPAFGDPWFGCGRDLFIADNAGGNKASCTEPHKYARPQGATSDGP 191
>SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)
Length = 174
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 640 KSGFLSPNSAVLFAKEKSTNSRAFTCFLYQSKNSRSL 530
KSG L ++F E +S+AF C LY +KN SL
Sbjct: 56 KSGRLGGMPNIVFNSEYQWSSKAFLCTLY-NKNGYSL 91
>SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)
Length = 963
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 331 DSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPA 462
D+L+ IAP A SLL + P+++P A +AL ++ P+
Sbjct: 365 DALSLQIAPSANNALSLLKGAYDALSPMIAPSANDALSLLKAPS 408
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,805,314
Number of Sequences: 59808
Number of extensions: 554949
Number of successful extensions: 1479
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -