Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b20r
(782 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 328 3e-90
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 31 1.2
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 31 1.2
Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 30 2.1
U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical p... 29 3.7
Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr... 28 8.7
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 328 bits (806), Expect = 3e-90
Identities = 160/212 (75%), Positives = 174/212 (82%)
Frame = -1
Query: 650 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 471
E + EW PVTKLGRLV+E KI LE IYL SLPIKEFEIID L +L DEVLKI PVQK
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110
Query: 470 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKI 291
QT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKI
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKI 170
Query: 290 GKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 111
G PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A+GST TLG
Sbjct: 171 GLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLG 230
Query: 110 NFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPY 15
NF YLTPDLW++ L KSPY
Sbjct: 231 NFAKATYAALQRTYSYLTPDLWKEEALEKSPY 262
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 445 RVRCPARVCFCTGMILRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 621
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 622 VTGT 633
+ T
Sbjct: 582 QSNT 585
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 445 RVRCPARVCFCTGMILRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 621
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 622 VTGT 633
+ T
Sbjct: 582 QSNT 585
>Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 254 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 123
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 254 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 123
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical
protein F55F8.9 protein.
Length = 477
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 162 SHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDL 266
+H K + +N RR+ +R +N+ YG+TL GDL
Sbjct: 218 THKKIVFKN-RRYGRRISRNQNRFSSYGSTLNGDL 251
>Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 429 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 515
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 429 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 515
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical
protein T01E8.3 protein.
Length = 1299
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 480 RHDLKNLIIQGRAEEEINDLEFFD-W*RKQVNALEFVDFSFANKTAEFGDRN-PLFLVF 650
+H+ K L++ + D + FD + ALEF++ F A FGDRN P VF
Sbjct: 220 KHERKGLVVTFQNFLRFLDGKQFDELASNRTRALEFLNRYFQEDQAYFGDRNEPSMTVF 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,686,895
Number of Sequences: 27780
Number of extensions: 396185
Number of successful extensions: 1109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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