Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b20f
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 266 1e-71
07_01_0756 + 5819367-5820038,5820847-5821005 262 1e-70
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 69 2e-12
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.1
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 28 5.4
01_06_0210 - 27559090-27559239,27560445-27560567,27561069-275611... 28 5.4
11_01_0395 + 2999855-2999920,3000605-3002191 28 7.1
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 27 9.4
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 27 9.4
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 27 9.4
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 266 bits (651), Expect = 1e-71
Identities = 118/154 (76%), Positives = 142/154 (92%)
Frame = +2
Query: 173 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 352
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96
Query: 353 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 532
KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 156
Query: 533 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 634
IG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A
Sbjct: 157 IGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 190
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 262 bits (643), Expect = 1e-70
Identities = 118/154 (76%), Positives = 141/154 (91%)
Frame = +2
Query: 173 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 352
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99
Query: 353 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 532
KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159
Query: 533 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 634
IGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A
Sbjct: 160 IGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 193
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 69.3 bits (162), Expect = 2e-12
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +2
Query: 392 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVT 568
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56
Query: 569 GKCGSVTVRLIPAPRGTGIVS 631
K GSVTVR++ P G+ +V+
Sbjct: 57 DKYGSVTVRMMLPPMGSSVVA 77
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +2
Query: 320 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 499
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 500 LPV 508
+ V
Sbjct: 231 VTV 233
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 454 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 338
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>04_03_1049 + 22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 128 DRHGLYLHRVIRIRRENRHVHRLEQRPP 45
D HGL+ + + RH+HR+E +PP
Sbjct: 1006 DMHGLHASEAVEVLE--RHLHRIEFQPP 1031
>01_06_0210 -
27559090-27559239,27560445-27560567,27561069-27561128,
27562045-27562068,27562313-27562653,27562684-27563731
Length = 581
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 207 NSAVLFAK-EKSTNSRAFTCFLYQSKNSRSLISSSARP*MMRFLRSCLYRNKHVPDSAHV 383
N AV+ A K RAF +YQS +R + S +P L CL + ++ +AHV
Sbjct: 381 NDAVVTALCSKGEVVRAFQ--VYQSMRTRGI---STKPTTFHLLVECLSKKNNLEKAAHV 435
Query: 384 SRHLL 398
R +L
Sbjct: 436 VRDML 440
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 260 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 379
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
>11_01_0515 +
4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 176 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLG 310
+ KE +P G V G+ +++ + SLPIK++ + FF G
Sbjct: 805 DGSKEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSFFSG 849
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 27.5 bits (58), Expect = 9.4
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -2
Query: 579 PHLPVTL-QGTVCGFPILLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSP 403
PH +T+ G + G P+L P TGR ++ RI A +A + P+ + P L+P
Sbjct: 141 PHSELTMGTGGMYGEPLLSPSSRRGTGRPSAVPRISASEVA---RRYYEPPQVMLPPLAP 197
Query: 402 M-ATNALKRV 376
M T A RV
Sbjct: 198 MQLTRAEHRV 207
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -3
Query: 179 LPCRAHDHGRDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQRPPLLNDGL 27
L C AH G D H L + +R R+ + +RL +R PL+++ L
Sbjct: 1048 LCCLAHALGEDFTIFVSSIHKLLVKHHMRYRKWDEIENRLLRREPLISENL 1098
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,651,344
Number of Sequences: 37544
Number of extensions: 379796
Number of successful extensions: 1108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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