Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b20f
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              283   6e-77
SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)                   32   0.34 
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.34 
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     32   0.34 
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)                   30   1.4  
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)                  29   2.4  
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      29   3.1  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_52533| Best HMM Match : rve (HMM E-Value=2)                         29   3.1  
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)                  29   3.1  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     29   3.1  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             29   4.1  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 28   5.5  
SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   5.5  
SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)                       28   7.2  
SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)               28   7.2  
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)                 27   9.6  
SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)                    27   9.6  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  283 bits (695), Expect = 6e-77
 Identities = 134/148 (90%), Positives = 140/148 (94%)
 Frame = +2

Query: 191 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 370
           WVPVTKLGRLV++ KI  LE IYLFSLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAG
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAG 67

Query: 371 QRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 550
           QRTRFKAFVAIGD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 68  QRTRFKAFVAIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHT 127

Query: 551 VPCKVTGKCGSVTVRLIPAPRGTGIVSA 634
           VPCKVTGKCGS  VRLIPAPRGTGIVSA
Sbjct: 128 VPCKVTGKCGSTRVRLIPAPRGTGIVSA 155


>SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)
          Length = 733

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 401 IGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLP-VRRGYWGNKIGKPHTVPCKVTGKC 577
           IGD+ G   + V+ +K   +   G++    L+  P +RRG  G++  KPH+ P  ++ + 
Sbjct: 137 IGDSGGIDTMDVR-NKATGSVAWGSVTKRPLTSTPDIRRGQTGSEFRKPHSEPRFMSARF 195

Query: 578 GS 583
           GS
Sbjct: 196 GS 197


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -1

Query: 493 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 314
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292

Query: 313 RAEEEI 296
           R ++E+
Sbjct: 293 RNQDEL 298


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -1

Query: 493 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 314
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576

Query: 313 RAEEEI 296
           R ++E+
Sbjct: 577 RNQDEL 582


>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
          Length = 382

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 215 GRVW*QEPTLSGLPCRAHDHGRDHDRVHEDRHGLYLH 105
           G +W +   L  LP     H  DHDR H  RH   +H
Sbjct: 103 GFLWQKNGVLLSLPPPQFRHSHDHDRHHYHRHHNNIH 139


>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
          Length = 280

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = -1

Query: 466 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 335
           N  G  LA  +   N+  +V NG K  + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 320 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 433
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 320 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 433
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 320  NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 433
            N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045


>SB_52533| Best HMM Match : rve (HMM E-Value=2)
          Length = 212

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 320 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 433
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 95  NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132


>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
          Length = 212

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 320 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 433
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 9   NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 320 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 433
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +2

Query: 500  LPVRRGYWGNKIG--KPHTVPCKVTGKCGSVTVRLIPAPRGT 619
            LP   GYW N  G   P   PC V   C +   +  P P GT
Sbjct: 3355 LPCPAGYWCNIKGLADPSISPCPVGHYCLNAIDKPTPCPNGT 3396


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 370 TAHTFQGICCHWRQQRSYW 426
           TA  +  ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504


>SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 822

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 494 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 634
           +V    RG+W   + + H + C V  +CG +   L  AP    +VS+
Sbjct: 303 TVFTTYRGFWNYALVRKHWLKCVVNLQCG-IAKHLSQAPSNKLLVSS 348


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 368 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 457
           G++ + K F+A+G  NGH+     C  ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385


>SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)
          Length = 174

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 186 KSGFLSPNSAVLFAKEKSTNSRAFTCFLYQSKNSRSL 296
           KSG L     ++F  E   +S+AF C LY +KN  SL
Sbjct: 56  KSGRLGGMPNIVFNSEYQWSSKAFLCTLY-NKNGYSL 91


>SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)
          Length = 963

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 495 DSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPA 364
           D+L+  IAP    A SLL      + P+++P A +AL  ++ P+
Sbjct: 365 DALSLQIAPSANNALSLLKGAYDALSPMIAPSANDALSLLKAPS 408


>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
          Length = 1683

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 347  VQKQTRAGQRTRFKAFVAIGDNNGHIGLGV--KCSKEVATAIRGAIILAKLSVLPVRRGY 520
            +Q+ TR  +RT         +NN ++ LG+   C   + TA+ G     +L+ + ++ G 
Sbjct: 1460 IQENTRTSRRTDISYRQLQANNNKNLELGIWRHCGPAILTALSG----RRLACVKIQAGP 1515

Query: 521  W 523
            W
Sbjct: 1516 W 1516


>SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)
          Length = 387

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 347 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGV--KCSKEVATAIRGAIILAKLSVLPVRRGY 520
           +Q+ TR  +RT         +NN ++ LG+   C   + TA+ G     +L+ + ++ G 
Sbjct: 274 IQENTRTSRRTDISYRQLQANNNKNLELGIWRHCGPAILTALSG----RRLACVKIQAGP 329

Query: 521 W 523
           W
Sbjct: 330 W 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,346,234
Number of Sequences: 59808
Number of extensions: 434013
Number of successful extensions: 1260
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)