Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b20f
         (634 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   305   2e-83
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   305   2e-83
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   305   2e-83
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   305   2e-83
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   305   2e-83
BT029103-1|ABJ17036.1|  823|Drosophila melanogaster IP14290p pro...    30   2.3  
AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA...    30   2.3  
AE014134-733|AAO41157.1|  579|Drosophila melanogaster CG33003-PA...    30   3.0  

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  305 bits (750), Expect = 2e-83
 Identities = 145/154 (94%), Positives = 148/154 (96%)
 Frame = +2

Query: 173 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 352
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 353 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 532
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 533 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 634
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSA
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSA 190


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  305 bits (750), Expect = 2e-83
 Identities = 145/154 (94%), Positives = 148/154 (96%)
 Frame = +2

Query: 173 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 352
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 353 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 532
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 533 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 634
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSA
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSA 190


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  305 bits (750), Expect = 2e-83
 Identities = 145/154 (94%), Positives = 148/154 (96%)
 Frame = +2

Query: 173 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 352
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 353 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 532
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 533 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 634
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSA
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSA 190


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  305 bits (750), Expect = 2e-83
 Identities = 145/154 (94%), Positives = 148/154 (96%)
 Frame = +2

Query: 173 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 352
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 353 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 532
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 533 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 634
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSA
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSA 190


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  305 bits (750), Expect = 2e-83
 Identities = 145/154 (94%), Positives = 148/154 (96%)
 Frame = +2

Query: 173 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 352
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 353 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 532
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 533 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 634
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSA
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSA 190


>BT029103-1|ABJ17036.1|  823|Drosophila melanogaster IP14290p
           protein.
          Length = 823

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 179 LPCRAHDHGRDHDRVHEDRHGLYLHRVIRIRREN-RHVHRLEQRPPLLN 36
           L C  H    D  R+H  + GL +  V+ + REN   VH + ++  LLN
Sbjct: 359 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 407


>AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA
           protein.
          Length = 1958

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 179 LPCRAHDHGRDHDRVHEDRHGLYLHRVIRIRREN-RHVHRLEQRPPLLN 36
           L C  H    D  R+H  + GL +  V+ + REN   VH + ++  LLN
Sbjct: 325 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 373


>AE014134-733|AAO41157.1|  579|Drosophila melanogaster CG33003-PA
           protein.
          Length = 579

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 164 HDHGRDHDRVHEDRHGLY 111
           HDH  DHD VH+  H  Y
Sbjct: 413 HDHAPDHDHVHDHHHDHY 430


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,095,172
Number of Sequences: 53049
Number of extensions: 634723
Number of successful extensions: 3978
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2924
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2641708800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)