Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b20f
(634 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 255 2e-68
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 31 0.91
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 31 0.91
Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr... 28 6.4
U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synt... 27 8.4
AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical ... 27 8.4
AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA sy... 27 8.4
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 255 bits (625), Expect = 2e-68
Identities = 125/153 (81%), Positives = 133/153 (86%)
Frame = +2
Query: 176 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 355
E + EW PVTKLGRLV+E KI LE IYL SLPIKEFEIID L +L DEVLKI PVQK
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110
Query: 356 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKI 535
QT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKI
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKI 170
Query: 536 GKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 634
G PHTVPCKVTGKC SV VRLIPAPRGTGIVSA
Sbjct: 171 GLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSA 203
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 0.91
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 381 RVRCPARVCFCTGMILRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 205
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 204 VTGT 193
+ T
Sbjct: 582 QSNT 585
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 0.91
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 381 RVRCPARVCFCTGMILRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 205
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 204 VTGT 193
+ T
Sbjct: 582 QSNT 585
>Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 397 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 311
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 397 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 311
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical
protein T01E8.3 protein.
Length = 1299
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 346 RHDLKNLIIQGRAEEEINDLEFFD-W*RKQVNALEFVDFSFANKTAEFGDRN-PLFLVF 176
+H+ K L++ + D + FD + ALEF++ F A FGDRN P VF
Sbjct: 220 KHERKGLVVTFQNFLRFLDGKQFDELASNRTRALEFLNRYFQEDQAYFGDRNEPSMTVF 278
>U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna
synthetase protein 1 protein.
Length = 441
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 15 DCLS-EPIVQQWRTLLQPVDVA 77
+CL+ E +VQ WR+LL P D +
Sbjct: 145 ECLTAEKLVQTWRSLLHPTDAS 166
>AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical
protein Y50D4A.3 protein.
Length = 407
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 437 KCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKV 565
+CS E T G ++ GY+G+ +G HT+ CK+
Sbjct: 284 ECSGEDPTNPGGPGESRRIKAFKWFNGYFGSPVGPEHTLSCKM 326
>AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA
synthetase protein.
Length = 441
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 15 DCLS-EPIVQQWRTLLQPVDVA 77
+CL+ E +VQ WR+LL P D +
Sbjct: 145 ECLTAEKLVQTWRSLLHPTDAS 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,533,526
Number of Sequences: 27780
Number of extensions: 306372
Number of successful extensions: 899
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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