Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b20f
(634 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 282 2e-76
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 276 1e-74
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 276 1e-74
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 276 1e-74
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 276 1e-74
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 274 4e-74
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 58 4e-09
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 2.6
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.4
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.5
At3g01450.1 68416.m00069 expressed protein 28 4.5
At3g63100.1 68416.m07087 glycine-rich protein 28 5.9
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 28 5.9
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 5.9
At4g03740.1 68417.m00513 hypothetical protein 27 7.8
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 27 7.8
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 282 bits (691), Expect = 2e-76
Identities = 124/152 (81%), Positives = 145/152 (95%)
Frame = +2
Query: 179 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 358
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQ
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100
Query: 359 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 538
TRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG
Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIG 160
Query: 539 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 634
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 192
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 276 bits (676), Expect = 1e-74
Identities = 124/152 (81%), Positives = 141/152 (92%)
Frame = +2
Query: 179 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 358
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 359 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 538
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 539 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 634
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 200
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 276 bits (676), Expect = 1e-74
Identities = 124/152 (81%), Positives = 141/152 (92%)
Frame = +2
Query: 179 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 358
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 359 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 538
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 539 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 634
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 200
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 276 bits (676), Expect = 1e-74
Identities = 124/152 (81%), Positives = 141/152 (92%)
Frame = +2
Query: 179 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 358
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 359 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 538
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 539 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 634
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 200
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 276 bits (676), Expect = 1e-74
Identities = 124/152 (81%), Positives = 141/152 (92%)
Frame = +2
Query: 179 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 358
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 359 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 538
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 539 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 634
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 200
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 274 bits (671), Expect = 4e-74
Identities = 122/152 (80%), Positives = 141/152 (92%)
Frame = +2
Query: 179 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 358
++++WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109
Query: 359 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 538
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 169
Query: 539 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 634
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 201
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 58.4 bits (135), Expect = 4e-09
Identities = 31/103 (30%), Positives = 58/103 (56%)
Frame = +2
Query: 323 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 502
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 503 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVS 631
V + K T P + G G+ V L PA GTG+++
Sbjct: 209 QV-------PMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIA 244
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 164 HDHGRDHDRVHEDRHGLYLH 105
HDH DHD H D H + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 531 LLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 352
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 351 CTGMILRTSSFR 316
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 389 AFVAIGDNNGHIGLGVKCSKE 451
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -2
Query: 552 TVCGFPILLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVR 373
T+ +LL Q L++ + A + VA + H +P + P L P N R+R
Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217
Query: 372 CPARVCF 352
A CF
Sbjct: 218 AKASTCF 224
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -3
Query: 158 HGRDH----DRVHEDRHGLYLHRVIRIRRENRHVH 66
HGRDH DR H HG + HR R R H H
Sbjct: 109 HGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGH 143
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 164 HDHGRDHDRVHEDRHG-LYLHRVIRIRRENRHVHRL 60
HDHG HD H HG Y R ++ +++ + +
Sbjct: 158 HDHGHGHDHGHSHDHGHSYGERAEQLLEKSKEIRNI 193
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 545 HTVPCKVTGKCGSVTVRL 598
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At4g03740.1 68417.m00513 hypothetical protein
Length = 345
Score = 27.5 bits (58), Expect = 7.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 559 QGHRQVWFRNSPADSCPSWYWYC 627
+ ++++WFR SCP W C
Sbjct: 60 RNNQEIWFRTFALGSCPHTLWPC 82
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 21 LSEPIVQQWRTLLQP 65
+S PI +QWRTL++P
Sbjct: 150 VSNPITKQWRTLIEP 164
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,755,343
Number of Sequences: 28952
Number of extensions: 288521
Number of successful extensions: 797
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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