Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b19r
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    28   1.7  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    27   3.9  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   5.1  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   6.8  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 755 IVWVLCILNSNTPYGLISVRTCFPMCLESQPTTGYRMYLYQ 633
           IV  L +L + T    I++  CF       PT G R  LYQ
Sbjct: 101 IVLCLVLLKNKTVISPITLLQCFFPLFRENPTRGVRELLYQ 141


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 549 GYFRPNEVE-LYNSYNAESRFI-YRYSNIGLI*VHAITCGRLRLEAH 683
           GY R   +   +++Y   S+ I Y+YSN+  +   A+ CG+     H
Sbjct: 3   GYIRTLFIRNRFSNYRLRSQIIKYKYSNVSYLNKSALRCGQATDSTH 49


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
 Frame = +3

Query: 579  YNSYNAESRFIYRYSNIGLI*VHAITCGRLRLEAHWKTG---SYRYQTI--WCI 725
            Y  YNA  R IYR+ N     V A     +     WK G   SY Y  +  WC+
Sbjct: 1307 YEIYNALIRSIYRFIN-----VEAFNSLFIDERGSWKRGTNISYNYHVLKDWCL 1355


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -3

Query: 631 PMLLYL*INRDSAL*LLYNSTSFGRKYPSCQHCVVIACRI*PTKHKVWCPLISVILPCNR 452
           P+L+    N++S + +LY +     + P     V   CR  PT+ K++  LI+  L  NR
Sbjct: 62  PILIRGASNKESGVSILYEANEDITQIPK----VYGLCRFIPTEEKIFLDLIATQLLPNR 117

Query: 451 TF 446
            +
Sbjct: 118 EY 119


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 231 KIECPKHPKHWNVL-EIVQVSASHSFNVGVIVLHL 332
           K++CP  PK WN+  ++ Q+    S   G +  ++
Sbjct: 575 KLDCPCSPKSWNISDDLGQIEYIFSDKTGTLTQNI 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,425,256
Number of Sequences: 5004
Number of extensions: 75528
Number of successful extensions: 206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)