Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b19r
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0139 - 20531320-20531433,20532146-20532276,20533031-205333... 31 0.76
03_02_0304 - 7273008-7273257,7273367-7273524,7273668-7273734,727... 30 2.3
10_02_0189 - 6486737-6486916,6486988-6487260,6487364-6487576,648... 29 3.1
07_03_1495 + 26983415-26984797 29 3.1
04_01_0190 - 2234038-2234674,2237128-2237665,2239294-2239378 29 3.1
07_03_0733 + 21062790-21063639,21063674-21063721,21065428-210654... 28 7.1
03_05_0720 + 27114301-27114548,27114647-27114926,27115104-271151... 28 7.1
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209... 28 9.4
08_01_1032 + 10447474-10448030,10448784-10449813 28 9.4
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 28 9.4
>11_06_0139 -
20531320-20531433,20532146-20532276,20533031-20533382,
20533384-20533527,20533726-20533875,20534197-20534204,
20534267-20534471
Length = 367
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 192 SSVHSWTNTSHYCVRSKTITSTGARHRLWYS 100
S+ H WT Y S T TS G R W+S
Sbjct: 111 STGHGWTTREKYVAISHTATSIGVRRARWFS 141
>03_02_0304 -
7273008-7273257,7273367-7273524,7273668-7273734,
7274461-7274645,7274801-7275215,7275311-7275418,
7275557-7275792,7275888-7275914
Length = 481
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 216 GCLGNSAVSSVHSWTNTSHYCVRSKTITSTG 124
GCLGN SV W + + +CV + S G
Sbjct: 257 GCLGNKGAVSVRFWLHDTSFCVACCHLASGG 287
>10_02_0189 -
6486737-6486916,6486988-6487260,6487364-6487576,
6489081-6489206
Length = 263
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +3
Query: 156 NSVKYSSSC---VHSKQQSCPGSLRCCCKIECPKHPKH 260
N V++S S +H Q C LR C + CP H H
Sbjct: 128 NLVEFSESVGQPIHQLDQLCGQCLRSFCGVSCPNHLVH 165
>07_03_1495 + 26983415-26984797
Length = 460
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2
Query: 392 RVRYAKKVFANEEDAKRTKGKVKYDDPDVERVRRAHLND 276
R + K+VFA EED + +V DD D E +RA N+
Sbjct: 247 RAKLVKRVFAAEEDEEDLSWEV--DDEDEEEQQRAEANE 283
>04_01_0190 - 2234038-2234674,2237128-2237665,2239294-2239378
Length = 419
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -1
Query: 198 AVSSVHSWTNTSHYCVRSKTITSTGARHRLWYSFHNYCVHGFQSSYTFYNC 46
AV + + N H ++ IT + ARH+ F+ +C+ G + + C
Sbjct: 117 AVKKIVNELNVGHKDFFTEVITISEARHKNLVKFYGWCIRGHSWNIIHFMC 167
>07_03_0733 +
21062790-21063639,21063674-21063721,21065428-21065478,
21065559-21065695,21065781-21065997,21066390-21066627,
21066720-21066870,21066990-21067334
Length = 678
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -1
Query: 216 GCLGNSAVSSVHSWTNTSHYCVRSKTITSTGARHRLWYSFHNY 88
GC S ++ + SW N Y S T G R WY H +
Sbjct: 206 GC--RSCLAGIISWVNDPDYFSGSPTGRVLGVRCNYWYDVHPF 246
>03_05_0720 +
27114301-27114548,27114647-27114926,27115104-27115154,
27115679-27116000,27116610-27116718,27116754-27116802
Length = 352
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 750 LGFVHTKFEYTIWSDICKNLFSNVPRVATDHRLSHVPISTQCYYI 616
L ++ F T WS I +L V H+L + IS YY+
Sbjct: 304 LALEYSSFNQTRWSFINTSLLEQARSVVLVHKLMNPSISPSIYYV 348
>12_02_0795 +
23217463-23217684,23218296-23219155,23220001-23220929,
23221184-23221968
Length = 931
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 356 EDAKRTKGKVKYDDPDVERVRRAHLNDLENIPVFWVLGALYLTTAPE 216
E + + G DPDVE +RR +++P LYL+ PE
Sbjct: 478 ERVRNSIGSTLQKDPDVEEMRRILSLSYDDLPQHLKTCLLYLSIFPE 524
>08_01_1032 + 10447474-10448030,10448784-10449813
Length = 528
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 138 ITSTGARHRLWYSFHNYCVHGFQSSYT-FYNCFVAI 34
IT R+W NYC+ +SYT +CF +
Sbjct: 260 ITDIAEAKRIWREMSNYCITPDGTSYTLMVSCFAKV 295
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Frame = +3
Query: 54 KMCNYFETHVHSNYERN---TKGD 116
++CNY ETH H NY N KGD
Sbjct: 2172 RICNYCETHRHFNYLYNFLVLKGD 2195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,179,890
Number of Sequences: 37544
Number of extensions: 450467
Number of successful extensions: 1151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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