Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b19r
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81122-13|CAB03356.3|  368|Caenorhabditis elegans Hypothetical p...    29   4.8  
AC006673-4|AAF39930.1|  512|Caenorhabditis elegans Hypothetical ...    29   4.8  
Z46787-1|CAA86739.2|  360|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL110478-2|CAB54344.1|  190|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p...    28   8.4  
AF016443-2|AAC24272.1|  359|Caenorhabditis elegans Hypothetical ...    28   8.4  

>Z81122-13|CAB03356.3|  368|Caenorhabditis elegans Hypothetical
           protein T13F2.5 protein.
          Length = 368

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
 Frame = -2

Query: 527 YRLSYLTYKT*SMVSINLSDPAVQSYILYSGILGLKLLAVTILTGRVRYAKKVFANEEDA 348
           Y LS   Y    M+ +  +   + +YI  S ++ + LLA  I     RY  K F  ++ +
Sbjct: 158 YTLSLFLYLWSLMIGLTYAFEIIPTYIHVSCLVSINLLAFVICLLNERYNSKKFVQKKFS 217

Query: 347 KRTKGKVKYDD--PDVERVRRAHL--NDLENIPVFWVLGALYL 231
            R        +    VE ++ A+L    + +I +F V+  ++L
Sbjct: 218 TRKSVTYSLSERYQIVENLKTAYLFKRGIISIILFSVICGVFL 260


>AC006673-4|AAF39930.1|  512|Caenorhabditis elegans Hypothetical
           protein K09D9.12 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 397 VNIVTANNFKPKIPEYKMYDCTAGS---LRLMDTILYV 501
           + +VT NN   K  E+K+  CTA S   LRL   + YV
Sbjct: 420 LRVVTGNNQSMKSVEFKLRTCTAVSSRCLRLQKKVAYV 457


>Z46787-1|CAA86739.2|  360|Caenorhabditis elegans Hypothetical
           protein C16C10.1 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 174 SSCVHSKQQSCPG--SLRCCCKIECPKHPKHWNVLEIVQVSASHSFNVGVIVLHLALCAL 347
           S C   K  +C G  S  C   +EC K  K  +V  + QVSAS S   G IV  L +  L
Sbjct: 3   SPCESGKTTNCSGAPSSSCAKSVECCK--KQLSVGVLQQVSASSS---GAIVTSLFMTPL 57

Query: 348 RVLFI 362
            V+ I
Sbjct: 58  DVVKI 62


>AL110478-2|CAB54344.1|  190|Caenorhabditis elegans Hypothetical
           protein Y26D4A.6 protein.
          Length = 190

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 663 RLRLEAHWKTGSYRYQTIWCIRI 731
           R + +A W T SYR Q IWC+R+
Sbjct: 24  RPKCDAGWYT-SYRPQGIWCLRV 45


>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical
           protein C26C6.1a protein.
          Length = 1883

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 292 RLTRSTSGSSYFTLPFVRFASSSFANTFLA*RTLPVNIVTANNFKPKIPEYKMYD 456
           R  RS++G++     F+R     F   +      P+++ T  + K KIPEY  YD
Sbjct: 54  RKHRSSAGNNSVFESFLRLPPRRFEPEYYEQVKEPIDVTTIQH-KLKIPEYLTYD 107


>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
           protein C26C6.1a protein.
          Length = 1883

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 292 RLTRSTSGSSYFTLPFVRFASSSFANTFLA*RTLPVNIVTANNFKPKIPEYKMYD 456
           R  RS++G++     F+R     F   +      P+++ T  + K KIPEY  YD
Sbjct: 54  RKHRSSAGNNSVFESFLRLPPRRFEPEYYEQVKEPIDVTTIQH-KLKIPEYLTYD 107


>AF016443-2|AAC24272.1|  359|Caenorhabditis elegans Hypothetical
           protein C17E7.6 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/32 (28%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 582 CIIQLHSDGNIRVVNIVLLSPVV-SNLQNIKY 490
           C++  H +G  R+ N++ L P++  N ++++Y
Sbjct: 306 CLLMYHRNGPSRLTNLLSLCPIIQKNFEDLQY 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,037,402
Number of Sequences: 27780
Number of extensions: 429271
Number of successful extensions: 1207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)