Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b19r
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.58 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   4.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   7.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   7.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.5  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.5  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -1

Query: 207 GNSAVSSVHSWT--NTSHYCVRSKTITSTG 124
           G  A    H+W   N   Y VRS+T+TS G
Sbjct: 12  GTVAADFQHNWQVGNEYTYLVRSRTLTSLG 41


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 208 GQLCCFECTQLDEY 167
           G  CC+ C Q +EY
Sbjct: 463 GDTCCWVCDQCEEY 476


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 208 GQLCCFECTQLDEY 167
           G  CC+ C Q +EY
Sbjct: 553 GDTCCWVCDQCEEY 566


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 471 TEINGHHTLCFVG*IRQAITTQC 539
           T  +GH   CF G  R++  +QC
Sbjct: 290 TTCSGHTVRCFTGGPRKSHESQC 312


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 272 ENIPVFWVLGALYLTTAPEAAW 207
           E I   + LGA  + T  EA+W
Sbjct: 135 EKISTLYALGAKIIRTPTEASW 156


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 576 LYNSYNAESRFIYRYSNIGL 635
           L + YN E++ IY   +IGL
Sbjct: 210 LNHDYNLENKLIYFIEDIGL 229


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 485 SINLSDPAVQSYILYSGILGLKLLAVTILTGRVRYAK 375
           S +L+ P +  Y+L++ IL    + +TI+   V Y K
Sbjct: 290 STSLALPLLGKYLLFTMILVGLSVVITIVILNVHYRK 326


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 320 DDPDVERVRRAHLNDLENIPVFWV 249
           + PD+       L+D++N+  FW+
Sbjct: 190 EQPDLNYYNPVVLDDMQNVLRFWL 213


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 320 DDPDVERVRRAHLNDLENIPVFWV 249
           + PD+       L+D++N+  FW+
Sbjct: 190 EQPDLNYYNPVVLDDMQNVLRFWL 213


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 761 LFIVWVLCILNSNTPYGLISVRT 693
           LF+ W+ C+L  + P   I+ +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 761 LFIVWVLCILNSNTPYGLISVRT 693
           LF+ W+ C+L  + P   I+ +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 761 LFIVWVLCILNSNTPYGLISVRT 693
           LF+ W+ C+L  + P   I+ +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 761 LFIVWVLCILNSNTPYGLISVRT 693
           LF+ W+ C+L  + P   I+ +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 761 LFIVWVLCILNSNTPYGLISVRT 693
           LF+ W+ C+L  + P   I+ +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 761 LFIVWVLCILNSNTPYGLISVRT 693
           LF+ W+ C+L  + P   I+ +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 761 LFIVWVLCILNSNTPYGLISVRT 693
           LF+ W+ C+L  + P   I+ +T
Sbjct: 366 LFLQWLPCLLRMSRPGKKITKKT 388


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 761 LFIVWVLCILNSNTPYGLISVRT 693
           LF+ W+ C+L  + P   I+ +T
Sbjct: 366 LFLQWLPCLLRMSRPGKKITKKT 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,620
Number of Sequences: 438
Number of extensions: 5417
Number of successful extensions: 36
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)