Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b19r
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL...    34   0.090
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s...    31   0.64 
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t...    31   1.1  
At1g14250.1 68414.m01687 nucleoside phosphatase family protein /...    30   1.5  
At1g14230.1 68414.m01684 nucleoside phosphatase family protein /...    29   2.6  
At5g28650.1 68418.m03508 WRKY family transcription factor DNA-bi...    28   5.9  
At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family...    28   5.9  
At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase f...    28   5.9  
At4g09450.1 68417.m01555 myb family transcription factor contain...    28   7.8  
At3g06440.1 68416.m00745 galactosyltransferase family protein co...    28   7.8  

>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
           identical to chromatin remodeling factor CHD3
           [Arabidopsis thaliana] GI:6478518
          Length = 1384

 Score = 34.3 bits (75), Expect = 0.090
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -2

Query: 389 VRY-AKKVFANEEDAKRTKGKVKYDDPDVERVRRAHLNDLENIPV 258
           +RY +K++FA+E+D     GK+ YDD  ++++    L + E + V
Sbjct: 761 IRYGSKELFASEDDEAGKSGKIHYDDAAIDKLLDRDLVEAEEVSV 805


>At4g31900.1 68417.m04533 chromatin remodeling factor, putative
           strong similarity to chromatin remodeling factor CHD3
           (PICKLE) [Arabidopsis thaliana] GI:6478518; contains
           Pfam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain
          Length = 1202

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = -2

Query: 434 ILGLKLLAVTILTGRVRY-AKKVFANEEDAKRTKGKVKYDDPDVER-VRRAHLNDLE 270
           ++G + L    L   ++Y +K++F+ E D     GK+ YDD  +E+ + R H++ +E
Sbjct: 672 VVGKQHLCQDELDDIIKYGSKELFSEENDEAGRSGKIHYDDAAIEQLLDRNHVDAVE 728


>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
           RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
           from [Homo sapiens], RNA-binding protein Y14 [Xenopus
           laevis] GI:11034807; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 202

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 365 ANEEDAKRTKGKVKYDDPDVERVRRAHLNDLENI 264
           AN E AK+TKG+   ++ D +R RR    D E++
Sbjct: 47  ANGESAKKTKGRGFREEKDSDRQRRLSSRDFESL 80


>At1g14250.1 68414.m01687 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to SP|P97687
           Ectonucleoside triphosphate diphosphohydrolase 1 (EC
           3.6.1.5) (Ecto-apyrase) {Rattus norvegicus}; contains
           Pfam profile PF01150: GDA1/CD39 (nucleoside phosphatase)
           family
          Length = 488

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 311 DVERVRRAHLNDLENIPVFWVLGALYLTT 225
           D ER++ A     ENIP+ W LGA  L T
Sbjct: 442 DDERIKYASKAGKENIPLDWALGAFILNT 470


>At1g14230.1 68414.m01684 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to SP|P49961
           Ectonucleoside triphosphate diphosphohydrolase 1 (EC
           3.6.1.5) (Ecto-apyrase) {Homo sapiens}; contains Pfam
           profile PF01150: GDA1/CD39 (nucleoside phosphatase)
           family
          Length = 503

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 311 DVERVRRAHLNDLENIPVFWVLGALYLTTA 222
           D ER++ A     E+IP+ W LGA  L TA
Sbjct: 450 DDERIKYASKAGEEDIPLDWALGAFILNTA 479


>At5g28650.1 68418.m03508 WRKY family transcription factor
           DNA-binding protein WRKY3, parsley, PIR:S72445
          Length = 330

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 186 HSKQQSCPGSLRCCCKIEC 242
           HS++ SC GSL+C  K +C
Sbjct: 216 HSRRTSCSGSLKCGSKSKC 234


>At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 1012

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 458 QSYILYSGILGLKLLAVTILTGRVRYAKKV 369
           QSY+ ++G+L L + A+T +  +V   K+V
Sbjct: 738 QSYVSFTGVLMLLITAITFVPSKVSLKKRV 767


>At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase
           family protein contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 367

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 87  SNYERNTKGDASRRLR*WFYCVHNSVKYSSSC--VHSKQQSCPGSLRC 224
           S ++     DAS  L   F C+H S   SSS   V S   +C GS  C
Sbjct: 121 SFFQEAQMNDASEVLAVIFDCLHRSFAQSSSVSDVDSSDSNCTGSWDC 168


>At4g09450.1 68417.m01555 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 200

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 177 WTNTSHYCVRSKTITSTGARHRLWYS 100
           W N S YCV+S+T T   +  + +++
Sbjct: 113 WKNISRYCVKSRTSTQVASHAQKYFA 138


>At3g06440.1 68416.m00745 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 619

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 452 YILYSGILGLKLLAVTILTGRVRYAKKVFANEEDA 348
           ++ Y G+L LK +A+ IL  +V  AK +   ++DA
Sbjct: 438 FVDYYGLLSLKTVALCILGTKVIPAKYIMKTDDDA 472


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,512,535
Number of Sequences: 28952
Number of extensions: 379153
Number of successful extensions: 1043
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)