Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b19f
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    27   2.7  
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        26   4.8  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   6.3  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   8.4  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    25   8.4  
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    25   8.4  

>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 216 ASSGLANILRVIRASAVRTVSDNNLRANIAECTIY-ACTTGLFNVNDT 76
           ASSG   I+ +  ASA+ T+SD +    + E   +    T ++N  D+
Sbjct: 388 ASSGHVLIIPIAHASALSTLSDTSYEKTLNEMNRFRKAVTDMYNACDS 435


>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 526 VKTFSENTYCDLPA 567
           +  F++NTYC+LPA
Sbjct: 63  ISLFNKNTYCELPA 76


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 300 FSKSFKWARRILSTTGSSYLTFPPLSIFA-SSGLANIL 190
           F+K F+  + I   + +SY     +SIFA +SGL NI+
Sbjct: 211 FTKFFRIFKFIAGLSVASYFVLLGMSIFAETSGLNNIM 248


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 252 SSYLTFPPLSIFASSGLANILR 187
           S  L+ PP+S F  S   NILR
Sbjct: 136 SKRLSLPPMSQFTDSDFVNILR 157


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 197 FANPEDAKMLRGGKVKYDDPVVE 265
           FANPE+ K+L+   V+  D ++E
Sbjct: 621 FANPEETKILKNDSVESYDWLIE 643


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/60 (20%), Positives = 29/60 (48%)
 Frame = +2

Query: 347 PAATFATLLFRLFTVFRILHTIVYAVIPLPQPSRAIAFGIPYIIMLYMGIQVILYYVTAL 526
           P AT A+ +F ++ +  ++ + +  +  + +   +      Y+I+ Y+G+      V AL
Sbjct: 19  PLATKASFIFSVYIIIGLIISYLLQIFRIVRLGSSQGLSFSYLILGYIGVLNAFSNVIAL 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,160
Number of Sequences: 5004
Number of extensions: 47023
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)