Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b19f
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0670 - 27128153-27129075,27129152-27129266,27129348-271295...    31   0.92 
03_05_1101 - 30408944-30410410                                         29   2.1  
07_03_1394 + 26254438-26254950                                         28   4.9  
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306...    28   4.9  
03_06_0390 + 33574495-33575976                                         28   6.5  
01_01_0839 - 6540971-6541978,6542076-6542240,6542330-6542419,654...    27   8.6  

>04_04_0670 -
           27128153-27129075,27129152-27129266,27129348-27129537,
           27129652-27129786,27129874-27129971,27131075-27131764
          Length = 716

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 23/104 (22%), Positives = 44/104 (42%)
 Frame = +2

Query: 212 DAKMLRGGKVKYDDPVVERIRRAHLNDLENIPAFWILGAFYVTTGPAATFATLLFRLFTV 391
           D+  L+  K   D PV++ + R  +   +NIP++     +   T  A     ++F     
Sbjct: 400 DSSKLKNAKKGEDMPVLDELHRNEVFTTDNIPSWLAFSGYLGLTFIAVIAIPMMFHEMKW 459

Query: 392 FRILHTIVYAVIPLPQPSRAIAFGIPYIIMLYMGIQVILYYVTA 523
           + ++  I Y + P      A   G+  I M Y   ++ L+ + A
Sbjct: 460 YYVV--IAYLLAPALGFCNAYGAGLTDINMAYNYGKIALFILAA 501


>03_05_1101 - 30408944-30410410
          Length = 488

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 288 FKWARRILSTTGSSYLTFPPLSIFASSGLANILRVIRASAVR 163
           F WA  I +  G   LTF P+ +F    + N++  +RA  +R
Sbjct: 132 FWWATDIAAELGVPRLTFSPVGVFPQLAMNNLV-TVRAEIIR 172


>07_03_1394 + 26254438-26254950
          Length = 170

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 444 EG*GNGITA*TMVCRIRNTVNNRKRSVANVAAG 346
           +G G+G  A   VCR+R  +  R+R VA  AAG
Sbjct: 26  DGDGDGEEAAAGVCRVRRQLRLRRRVVAAGAAG 58


>06_02_0046 +
           10928708-10928798,10929997-10930077,10930567-10930685,
           10931275-10931894,10931992-10933184,10933280-10933359,
           10933751-10933846,10933931-10934004,10936007-10936151,
           10936323-10936487
          Length = 887

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
 Frame = +1

Query: 295 GEYSRILDTRSVLCDYWTGSNIRNASFPIVYRVPYSAHHRLRCYSITSAFK----SYSFR 462
           G +  I+  +S  C YW        +    + +P      +   S+TSA       YS  
Sbjct: 175 GNWKTIMHEQSNQCYYWN-----TVTGETSWEIPNVLASEIAADSVTSASAPTHVDYSME 229

Query: 463 ---HTLHHNAVHGYPSNPVLCHSTV 528
              H L HNAV  YPS+  + + +V
Sbjct: 230 AQAHALTHNAVEAYPSDISVLNGSV 254


>03_06_0390 + 33574495-33575976
          Length = 493

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 288 FKWARRILSTTGSSYLTFPPLSIFASSGLANILRVIRASAVRTVSD 151
           F WA  + +  G   LTF P+ +F    + N++  +R   VR  +D
Sbjct: 131 FWWATGVAAELGVPRLTFNPVGVFPQLAMNNLV-AVRPDIVRGGAD 175


>01_01_0839 -
           6540971-6541978,6542076-6542240,6542330-6542419,
           6542536-6542736,6542886-6543098,6543216-6543461
          Length = 640

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +1

Query: 337 DYWTGSNIRNASFPIVY--RVPYSAHHR 414
           DY  GSN R  S+ + Y  R P  AHHR
Sbjct: 408 DYILGSNPRGISYMVGYGARYPRRAHHR 435


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,454
Number of Sequences: 37544
Number of extensions: 283899
Number of successful extensions: 666
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)