Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b19f
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10588| Best HMM Match : Sec63 (HMM E-Value=0)                       31   0.53 
SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)                 31   0.93 
SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_58390| Best HMM Match : DUF1167 (HMM E-Value=0)                     29   2.2  
SB_27437| Best HMM Match : Peptidase_M48 (HMM E-Value=8.4e-07)         29   2.9  
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)                28   5.0  
SB_29551| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)                28   5.0  
SB_51623| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15)              28   6.6  

>SB_10588| Best HMM Match : Sec63 (HMM E-Value=0)
          Length = 1047

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 177 HV*HEEYLLIQRMRKCSEEERSSTMTLSLREFAEP 281
           H+ H EYLL+Q+ +  SEE +S   T+ + E   P
Sbjct: 71  HIYHSEYLLLQKKQVLSEEPQSLVFTIPIFEPLPP 105


>SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
          Length = 399

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 397 YSAHHRLR-CYSITSAFKSYSFRHTLHHNA-VHGYPSNPVLCHSTVKT 534
           Y +HH L   + +TS F  Y+  H LHH + V  + +  +  H+ + T
Sbjct: 195 YISHHALLPTFRVTSHFSRYTSHHALHHTSRVASHTTRYISHHALIPT 242


>SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +2

Query: 233 GKVKYDDPVVERIRRAHLN 289
           GK+KYDDP+ E++R+A  N
Sbjct: 373 GKMKYDDPLFEKVRQAKEN 391


>SB_58390| Best HMM Match : DUF1167 (HMM E-Value=0)
          Length = 734

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -1

Query: 405 CRIRNTVNNRKRSVANVAAGPVVT*NAPSIQNAGIFSKSFKWARRILSTTGSSYLTFPPL 226
           CR R     RK S    ++  V   + P+    G +S      R + +++ SSY  FP  
Sbjct: 248 CRKRTISEKRKVSRCQSSSHFVFIASWPNPSIFGTYSPHRSSIRSVANSSISSYQDFPRT 307

Query: 225 SIFASSGLA 199
           +++ S G+A
Sbjct: 308 TVYRSEGMA 316


>SB_27437| Best HMM Match : Peptidase_M48 (HMM E-Value=8.4e-07)
          Length = 185

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -1

Query: 363 ANVAAGPVVT*NAPSIQNAGIFSKSFKWARRILSTTGSSYLTFPPLSI 220
           +N+ AG ++   AP    AGI   +   +R  L+  G++Y+T  PLS+
Sbjct: 122 SNIFAGILIAILAPMA--AGIIQMAISRSREYLADEGAAYMTEDPLSL 167


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 400  SAHHRLRCYSITSAFKSYSFRHTLHHNAVHGYPSNPVLCHSTVKT 534
            SAH ++    I      Y +R     N+    P++P+LCH   KT
Sbjct: 3433 SAHAQMFVTMIEGPALHYRYRSLSDRNSTLQLPTHPLLCHLARKT 3477


>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
          Length = 455

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +1

Query: 448 SYSFRHTLHHNAVHGYPSNPVLCHSTVKTFSENTYCDLPAFIYXLGFVHT 597
           S   R    H+ + G    PVL H + +TFS    C     I+ LG VHT
Sbjct: 382 SVRLRSKRSHSLMVGSMQAPVLPHRSNRTFS--LPCSSRPIIFSLGNVHT 429


>SB_29551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
 Frame = +2

Query: 317 ILGAFYVTTGPAATFATLLFRLFTVFRILHTIVYAVIPLPQPSRAIAFGIPYIIML--YM 490
           I G F+       T   L   LFT+F  +  IVY   P    S+ +A  I   IM     
Sbjct: 338 IYGDFHTWEKMGVTLKILFALLFTIFIPVWAIVYFFTPTSCLSQKLATPILKFIMHTGAF 397

Query: 491 GIQVILYYVTAL*RLLVKILTVTFLHLFIX-WV 586
           G+ ++L  ++++  L    L +T L + I  W+
Sbjct: 398 GLFLLLLILSSVEDLFFDPLRITPLDILITIWI 430


>SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)
          Length = 718

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +2

Query: 323 GAFYVTTGPAATF-ATLLFRLFTVFRILHTIVYAVIPLPQPSRAIAFGIPYIIMLY-MGI 496
           GAFY+      +   T +   +     LH + +  I  P P   I + +P++++ Y +  
Sbjct: 503 GAFYLAPPEDGSRPGTFMVNTYKHEESLHPVPFMFITYPVPLMVITYPVPFMVITYPVPF 562

Query: 497 QVILYYV 517
            VI Y V
Sbjct: 563 MVITYPV 569


>SB_51623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +2

Query: 365 TLLFRLFTVFRILHTIVYAVIPLPQPSRAIAFGIPYIIMLYMG-IQVILYYVTAL*RLLV 541
           T++  L TV  +L T+V  ++ +      +   +  ++ML +  + ++L  VT L  +++
Sbjct: 100 TVVMLLLTVVMLLLTVVMLLLTVMMLLLTVMMLLLTVVMLLLTVVMLLLTVVTLLLTVVM 159

Query: 542 KILTVTFLHLFIXWVL 589
            +LTV  L L +  +L
Sbjct: 160 LLLTVMMLLLTVMMLL 175


>SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15)
          Length = 537

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/41 (24%), Positives = 25/41 (60%)
 Frame = +2

Query: 2   IRILLVEHTRRHVVNPVVNECVYKMVSLTLNNPVVQAYIVH 124
           ++I +  + ++H +N   N+ V++ +S  L+ PV +  ++H
Sbjct: 155 LKIFIKHNHKKHELNVEKNQNVFEAISSLLHIPVTKLKVIH 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,677,328
Number of Sequences: 59808
Number of extensions: 351617
Number of successful extensions: 938
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)