Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b19f
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical pr...    31   0.82 
AC006717-1|AAY55883.2|  101|Caenorhabditis elegans Hypothetical ...    29   1.9  
U97010-6|AAL65797.1|  501|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    28   4.4  
U50068-4|AAB37733.1|  287|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine...    27   7.7  

>Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical
           protein C47E8.3 protein.
          Length = 405

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +2

Query: 359 FATLLFRLFTVFRILHTIVYAVIPLPQPSRAIAFGIPYIIMLYMGIQVILYYVTAL*RLL 538
           FATL+     +F   +TIV+   P  + S    FG+  +I + MGI  I   V  +   +
Sbjct: 32  FATLIAVTSIIFNTFYTIVFIRNPSLRRSGLFYFGVIAVIDIIMGINYIAVMVVPV--YM 89

Query: 539 VKILTVTFLHLFIXW 583
              L +   H+F+ +
Sbjct: 90  DYYLYLPLWHIFLSY 104


>AC006717-1|AAY55883.2|  101|Caenorhabditis elegans Hypothetical
           protein Y14H12A.2 protein.
          Length = 101

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 363 QRFFSD-CLPCSVFCTPSFTLLFHYLS 440
           Q +FSD C  C+V+C PS  L+ +Y +
Sbjct: 64  QTWFSDNCWSCTVYCIPSNRLIHYYFN 90


>U97010-6|AAL65797.1|  501|Caenorhabditis elegans Hypothetical
           protein W08A12.1a protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/78 (23%), Positives = 33/78 (42%)
 Frame = +2

Query: 20  EHTRRHVVNPVVNECVYKMVSLTLNNPVVQAYIVHXXXXXXXXXXXXXXXXXXRMTRRIF 199
           +H R++ V+PV   C     S++L   V +  +                     +  ++F
Sbjct: 81  QHHRKYRVSPVKTTCSR---SVSLERKVYKIVLTGGPCGGKTTAQVRLATFFENLGWKVF 137

Query: 200 ANPEDAKMLRGGKVKYDD 253
             PE A +L GG+VK+ +
Sbjct: 138 TVPETATILLGGRVKFSE 155


>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 376 PIVYRVPYSAHHRLRCYSITSAFKSY-SFRHTLHHNAVHGYPSNPVLCHSTVKTFSENT 549
           P  Y    S HH  R  + T +  S+ S  +T  +N  +  PSN  L HSTV + + ++
Sbjct: 272 PQHYNSNSSDHHPPRRLAKTQSDLSFDSLNNTYFNNTSNHTPSNTFLNHSTVDSHNNSS 330


>U50068-4|AAB37733.1|  287|Caenorhabditis elegans Hypothetical
           protein C01G5.5 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 227 RGGKVKYDDPVVERIRRAHLNDLENIPAFWILGAFYVTTGPAAT 358
           RG K    D  +ERI   H   + N+   WI+   Y     + T
Sbjct: 203 RGNKTLLGDSTMERIALCHKTTVANVILAWIMKGKYGVVAKSVT 246


>AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine
           receptor protein 21 protein.
          Length = 469

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 457 FRHTLHHNAVHGYPSNPVL 513
           F   +HH  VHGYP  P L
Sbjct: 290 FTVNIHHTGVHGYPVPPFL 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,009,966
Number of Sequences: 27780
Number of extensions: 260978
Number of successful extensions: 758
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)