Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b19f
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   6.9  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   6.9  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   6.9  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   6.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   6.9  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.2  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 291 IWRIFPHFGYSERFM*LLDRQQHSQRFFSDCLP 389
           IW +  +  +   F+ ++  Q  S R F+ C+P
Sbjct: 7   IWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVP 39


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 291 IWRIFPHFGYSERFM*LLDRQQHSQRFFSDCLP 389
           IW +  +  +   F+ ++  Q  S R F+ C+P
Sbjct: 7   IWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVP 39


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 291 IWRIFPHFGYSERFM*LLDRQQHSQRFFSDCLP 389
           IW +  +  +   F+ ++  Q  S R F+ C+P
Sbjct: 7   IWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVP 39


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 329 FYVTTGPAATFATLLFRLFTVFRILHTIVYAVIPLPQP 442
           F++   P+ATF+  L ++ +VF   +T   AVIP+  P
Sbjct: 135 FFIYVHPSATFSLDLNKVVSVF---YT---AVIPMLNP 166


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 481 AVHGYPSNPVLCHSTVKTFSE 543
           ++ GYP NP L  +  K   E
Sbjct: 113 SLEGYPFNPCLTEAQYKEMEE 133


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 200 ANPEDAKMLRGGKVKYDDPVVERIRRAHLNDLENIP 307
           A+P+    ++    K  + V+E I++AH  +LE  P
Sbjct: 155 ADPQTYLEIQKXIKKAKEDVIEVIQKAHNMELEPTP 190


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 481 AVHGYPSNPVLCHSTVKTFSE 543
           ++ GYP NP L  +  K   E
Sbjct: 129 SLEGYPFNPCLTEAQYKEMEE 149


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 427 NNSVNDGVQNTEH 389
           NN+ ND +QNT +
Sbjct: 416 NNNQNDNIQNTNN 428


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 329 FYVTTGPAATFATLLFRLFTVFRILHTIVYAVIPLPQP 442
           F++   P+ATF+  L ++ +VF   +T   AVIP+  P
Sbjct: 134 FFIYVQPSATFSLDLNKVVSVF---YT---AVIPMFSP 165


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 493 YPSNPVLCHSTVKTFSEN 546
           YP NPVL  S+++  S N
Sbjct: 177 YPFNPVLFISSLENISLN 194


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 493 YPSNPVLCHSTVKTFSEN 546
           YP NPVL  S+++  S N
Sbjct: 215 YPFNPVLFISSLENISLN 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,647
Number of Sequences: 438
Number of extensions: 3195
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)