Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b18f
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...   203   7e-53
AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical ...    69   3e-12
AC025721-13|AAR85897.1|  139|Caenorhabditis elegans Hypothetical...    44   7e-05
U29382-6|AAF99998.1|  379|Caenorhabditis elegans Hypothetical pr...    27   8.0  
L14710-6|AAA28079.1|  227|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score =  203 bits (496), Expect = 7e-53
 Identities = 94/149 (63%), Positives = 114/149 (76%), Gaps = 1/149 (0%)
 Frame = +2

Query: 83  ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 262
           ERTFI +KPDGV RGLVG II RFE++G+KLV LK +  S+  L+ HY DL  +PFFP L
Sbjct: 5   ERTFIAIKPDGVHRGLVGKIIARFEERGYKLVALKQMTASKAHLEVHYQDLKDKPFFPSL 64

Query: 263 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 442
           ++YMSSGPVV MVW+GL+VVK GR MLGATNP  S PGTIRGD CIQ GRNI HGSD+V+
Sbjct: 65  IEYMSSGPVVAMVWQGLDVVKQGRSMLGATNPLASAPGTIRGDFCIQTGRNICHGSDAVD 124

Query: 443 SAKKEIGLWFTDKEVVGW-TPANENWVYE 526
           SA +EI  WF  +E+  + +P   +WVYE
Sbjct: 125 SANREIAHWFKQEEINDYASPFINSWVYE 153


>AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical
           protein F55A3.6 protein.
          Length = 118

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 37/79 (46%), Positives = 48/79 (60%)
 Frame = +2

Query: 242 RPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNII 421
           +PFFP L+ YMSSGPVV M+WEG +VVK  R +LG       +  +I  DL ++      
Sbjct: 33  KPFFPLLIDYMSSGPVVAMLWEGCDVVKRARVILGEELEV-GEFRSIFYDLVVRDTHKGC 91

Query: 422 HGSDSVESAKKEIGLWFTD 478
           H SDSV SA +E  LWF +
Sbjct: 92  HCSDSVASANREYVLWFEE 110


>AC025721-13|AAR85897.1|  139|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.15 protein.
          Length = 139

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
 Frame = +2

Query: 95  IMVKPDGV-QRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGLVKY 271
           +++KP+ V  R L    +      G ++  ++ +  S  L +Q Y+    + F+  LV++
Sbjct: 14  VVLKPEIVAHRVLAQVALSELRSNGIEIEEMRQMKISGSLAKQLYAQHQGKFFYDRLVRH 73

Query: 272 MSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAK 451
           +SSGPV+ M   G      G   L        QP  IR    +   RN+ H SD  ++A+
Sbjct: 74  ISSGPVIAMRVSGNARKCIGSSRLWPRLEPTVQP--IRQRFALSDVRNVAHASDE-DAAE 130

Query: 452 KEIGLW 469
           KE+ L+
Sbjct: 131 KELQLF 136


>U29382-6|AAF99998.1|  379|Caenorhabditis elegans Hypothetical
           protein R03H10.1 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 209 LLQQHYSDLASRPFFPGLVKYMSSGPVVPMVW 304
           LL + + ++ S   +PG V+++   P++P  W
Sbjct: 144 LLDRCWKNVDSMELYPGTVQFLDKLPIIPSNW 175


>L14710-6|AAA28079.1|  227|Caenorhabditis elegans Hypothetical
           protein K02D10.4 protein.
          Length = 227

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 130 CGHHY*TFRKERLQTSRFEIRMAIRRTSP 216
           CGH        R +T +FE R+ ++R+SP
Sbjct: 107 CGHPVEVDDHHRRETKKFENRLTLKRSSP 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,678,834
Number of Sequences: 27780
Number of extensions: 284107
Number of successful extensions: 786
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)