Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b17r
         (746 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54PR3 Cluster: Putative uncharacterized protein; n=2; ...    34   3.2  
UniRef50_Q6ZSA2 Cluster: CDNA FLJ45698 fis, clone FEBRA2017811; ...    33   5.6  

>UniRef50_Q54PR3 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 362

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = -2

Query: 172 E*MRSSKQQAR*SDYNQEDPSDTHTVVHIDAV*IFIWLKTYVVIPECILGHVC 14
           E M +  +++   D N ED   TH+++ +  V +F  LK+ +++P CI G  C
Sbjct: 58  ESMLNKLRKSTNEDKNNEDQYLTHSILFMFQVSMFELLKSEMILPSCIFGISC 110


>UniRef50_Q6ZSA2 Cluster: CDNA FLJ45698 fis, clone FEBRA2017811;
          n=3; Homo sapiens|Rep: CDNA FLJ45698 fis, clone
          FEBRA2017811 - Homo sapiens (Human)
          Length = 415

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 3  NTDTHTCPRIHSGITTYVFNHIN 71
          +TDTHTC  IHS I T+   HI+
Sbjct: 16 HTDTHTCTHIHSHIHTFTCTHIH 38


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 611,477,310
Number of Sequences: 1657284
Number of extensions: 10818673
Number of successful extensions: 20291
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20244
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)