Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b17r
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.3  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   9.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.3  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 455 SGGTRSDQLACKI 417
           SGG RSDQ+  KI
Sbjct: 290 SGGIRSDQMGVKI 302


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 560 FGNSYDTKKEYNKNGGVCDY 501
           +GN   +K+EYN  G V ++
Sbjct: 248 YGNEAISKREYNGIGAVIEF 267


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 434 QLACKIAFLFVIFFVSFSGLY 372
           +LAC   F+  +  ++FSGL+
Sbjct: 46  KLACTDTFMEGVIVLAFSGLF 66


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 290 YANANNFRMIYYV*NF 337
           Y N NN++ +YY  N+
Sbjct: 317 YYNNNNYKKLYYNINY 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,236
Number of Sequences: 438
Number of extensions: 3614
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)