Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b17f
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 54 2e-08
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 34 0.014
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 29 0.53
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 29 0.70
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 28 0.93
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 28 1.2
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 27 1.6
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 27 1.6
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 27 2.1
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 27 2.1
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 2.8
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit... 27 2.8
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 3.7
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 25 6.5
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 6.5
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 25 8.7
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 25 8.7
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 54.0 bits (124), Expect = 2e-08
Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 2/148 (1%)
Frame = +1
Query: 163 DVDFAMDVETHSTRERQTELEEYPYEVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLN 342
D D +D + + ++ Y V+S ++ + + I ++ +++++ L
Sbjct: 29 DEDAEIDDDGFTVERKRRRAHSVSYRVVSVRDLRASLNEKINQLTSIIDLTREQVLGLYR 88
Query: 343 HFKWDKEKLMERFYDGDQDQLFSEARVINPFRKPVIQRPKLPRRISTSGMEECEICF--S 516
+FKW++E+L+ER+ D ++ L +K + +R CEIC+
Sbjct: 89 YFKWNRERLLERYIDAPEESL----------QKAGVGLSGSKQREVVHHEGTCEICYDEG 138
Query: 517 VLPTSIMTGLECGHRFCTQCWCEYLTTK 600
LP EC H FC C+ +YL ++
Sbjct: 139 CLP---FFSAECDHEFCLACYRQYLDSR 163
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 34.3 bits (75), Expect = 0.014
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 496 ECEICFSVLPTSIMTGLECGHRFCTQCWCEYLT 594
EC+ICF +L +++ CGH FC C + LT
Sbjct: 168 ECQICFGMLYDPVVS--PCGHTFCGPCLMQALT 198
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 29.1 bits (62), Expect = 0.53
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 277 DCIKEVNTVVEIPATTTRILLNHFKWDKEKLME 375
+ I E+ +++PA T + +L F WD ++ +E
Sbjct: 8 EAIDELRNSLDVPADTAQSVLESFNWDVQEAIE 40
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 28.7 bits (61), Expect = 0.70
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +1
Query: 487 GMEECEICFSVLPTS-IMTGLECG---HRFCTQC 576
G+EEC IC+SVL + CG H+F C
Sbjct: 1554 GVEECAICYSVLSVERTLPNKRCGTCRHKFHASC 1587
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 28.3 bits (60), Expect = 0.93
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 487 GMEECEIC-FSVLPTSIMTGLECGHRFCTQC 576
GM +C +C FS + ++ CGH FC+ C
Sbjct: 635 GMLKCSVCNFSNWKSKLIPN--CGHAFCSNC 663
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 487 GMEECEICFSVLPTSIMTGLECGHRFCTQC 576
G +C +C + T ECGH FC C
Sbjct: 252 GNRKCSLCMEFIHCPAAT--ECGHIFCWSC 279
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 496 ECEICFSVLPTSIMTGLECGHRFCTQCWCE 585
EC ICF P++ C C++C+ E
Sbjct: 150 ECPICFLYYPSNFNYTRCCAQPICSECFVE 179
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 355 DKEKLMERFYDGDQDQLFSEARVINPFRK 441
D K+ +RFYD D + F E+ PF K
Sbjct: 290 DDGKMTKRFYDLDGNDFFWESNASKPFPK 318
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +1
Query: 460 KLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCEYL 591
K+P C IC ++T C H FC+ C +YL
Sbjct: 16 KIPSLKGLDSSLRCLICHEYFRAPLITS--CSHTFCSFCIRDYL 57
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCWCEYL 591
C+IC V +I + C H FC C EY+
Sbjct: 711 CKICDEVAQDAIES--RCHHTFCRLCVTEYI 739
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 457 PKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQC 576
PKLP I+ S + C+IC + + L G FC C
Sbjct: 243 PKLPFEINVSTTDICKICGEKIKNPAV--LSTGFVFCYPC 280
>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 223 EEYPYEVLSTEE--IVQHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQ 396
EE+ + L E ++++M++ + E+N + +P ++ +L +W E Y G +
Sbjct: 12 EEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEW-CEHHKNDLYSGTE 70
Query: 397 DQ 402
++
Sbjct: 71 EE 72
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQC 576
C IC + I T CGH FC QC
Sbjct: 254 CLICKKDYRSPIAT--TCGHHFCEQC 277
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 25.4 bits (53), Expect = 6.5
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1
Query: 304 VEIPATTTRILLNHFKWDKEKLMERFYDGDQDQLFSEARVINPFRKPVIQRPKLPRRIST 483
+E+P RIL + +W+ + F +Q QL S R NP + + +L RR
Sbjct: 361 IELPLLHRRILTHTTEWNINWCIFNFVFDEQGQLRSAFR--NPNSRKRLSE-ELRRRFIV 417
Query: 484 SGMEEC 501
+G C
Sbjct: 418 AGFLNC 423
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 6.5
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1
Query: 544 LECGHRFCTQCW 579
++CGHR C CW
Sbjct: 262 VKCGHRSCPICW 273
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 499 CEICFSVLP-TSIMTGLECGHRFCTQCWCEYLTT 597
C IC++ I+ L C H F TQC ++TT
Sbjct: 205 CIICYADYAFDDILRVLPCEHVFHTQCIDTWMTT 238
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 344 ISNGTKRSLWNVFMMETRISCSLKLEL 424
IS + +SL+N +M T CS+ ++
Sbjct: 266 ISGSSTKSLYNDYMFHTEFKCSILYDI 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,332
Number of Sequences: 5004
Number of extensions: 53392
Number of successful extensions: 196
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -