Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b17f
(609 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41628| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 7e-05
SB_55976| Best HMM Match : zf-C3HC4 (HMM E-Value=0.087) 37 0.015
SB_41985| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 36 0.034
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.045
SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 33 0.14
SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 33 0.18
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05) 32 0.32
SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_2351| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-07) 32 0.32
SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11) 31 0.55
SB_4328| Best HMM Match : Vicilin_N (HMM E-Value=0.39) 31 0.55
SB_14437| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 31 0.97
SB_49650| Best HMM Match : RVT_1 (HMM E-Value=1.3) 30 1.3
SB_14489| Best HMM Match : DUF789 (HMM E-Value=5.6) 30 1.3
SB_10780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21) 30 1.3
SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 30 1.3
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 30 1.7
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30) 29 3.9
SB_12595| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_37498| Best HMM Match : MATH (HMM E-Value=1.8e-28) 29 3.9
SB_41147| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_79| Best HMM Match : rve (HMM E-Value=1.4e-14) 28 5.1
SB_47038| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_28795| Best HMM Match : AP2 (HMM E-Value=3.9) 28 5.1
SB_22297| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) 28 5.1
SB_1336| Best HMM Match : zf-C2H2 (HMM E-Value=2.9e-16) 28 5.1
SB_11628| Best HMM Match : DUF1014 (HMM E-Value=0.64) 28 6.8
SB_10513| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_5292| Best HMM Match : GlnE (HMM E-Value=1.7) 28 6.8
SB_57306| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_5274| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_37786| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_51276| Best HMM Match : rve (HMM E-Value=1.4e-05) 27 9.0
SB_50665| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_46839| Best HMM Match : rve (HMM E-Value=7.3e-11) 27 9.0
SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_38368| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-15) 27 9.0
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 9.0
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18) 27 9.0
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011) 27 9.0
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 27 9.0
SB_23299| Best HMM Match : zf-C3HC4 (HMM E-Value=5.9e-06) 27 9.0
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 9.0
SB_22842| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_18762| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_41628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 690
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = +1
Query: 400 QLFSEARVINPFRKPVIQRPKLPRRISTSGM----EECEICFSVLPTSIMTGL-ECGHRF 564
++FS + ++ ++++ K+ I T +EC ICF + MT L CGH F
Sbjct: 275 KVFSVSEANEKLQQDLVKQAKIRSGIDTRDWFMVSKECGICFGDFRENKMTALMSCGHSF 334
Query: 565 CTQCWCEYLTTK 600
CT+CW YL ++
Sbjct: 335 CTECWEFYLKSQ 346
>SB_55976| Best HMM Match : zf-C3HC4 (HMM E-Value=0.087)
Length = 171
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 472 RISTSGMEECEICFSVLPTSIMTGLE-CGHRFCTQCWCEYLTTK 600
R+ + C++CFS P S+ CGH FC +C Y T +
Sbjct: 112 RVFDTSYFTCDVCFSEKPGSMCLAFHNCGHVFCCECMTGYFTVQ 155
>SB_41985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 472 RISTSGMEECEICFSVLPTSIMTGLE-CGHRFCTQCWCEYLTTK 600
R+ + C++CFS P S+ CGH FC +C Y T +
Sbjct: 204 RVFDTSYFTCDVCFSEKPGSMCLAFHNCGHVFCCECMTGYFTVQ 247
>SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +1
Query: 451 QRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCEYL 591
+ P+ R +S C IC VL I T C H FC C CE+L
Sbjct: 144 EMPETERFVSPPDFVFCAICKEVLTQPIAT--PCDHYFCVLCICEWL 188
>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.045
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 496 ECEICFSVLPTSIMTGLECGHRFCTQCWCEYL 591
+C ICF VL ++T CGH FC+QC ++
Sbjct: 56 KCGICFGVLEDPLVT--TCGHVFCSQCLVHWI 85
>SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 451 QRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCEYL 591
+ P+ R + C IC VL I T C H FC C CE+L
Sbjct: 144 EMPETERFVCPPDFVFCAICKEVLTQPIAT--PCDHYFCVLCICEWL 188
>SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 451 QRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCEYL 591
+ P+ R + C IC VL I T C H FC C CE+L
Sbjct: 144 EMPETERFVCPPDFVFCAICKEVLTQPIAT--PCDHYFCVLCICEWL 188
>SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 262
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 451 QRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCEYL 591
+ P+ R + C IC VL I T C H FC C CE+L
Sbjct: 18 EMPETGRFVCPPDFVFCAICKEVLTQPIAT--PCDHYFCVLCICEWL 62
>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 508 CFSVLPTSIMTGLE-CGHRFCTQCWCEYLTTK 600
C TGL C H+FC CW +YLT +
Sbjct: 365 CLKFEHEDFSTGLLLCSHKFCNSCWHQYLTVQ 396
>SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)
Length = 509
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +1
Query: 493 EECEICFSVLPTS--IMTGLECGHRFCTQCWCEYLTTK 600
E C IC L + + L CGH C CW YL K
Sbjct: 204 EPCMICSDDLTGADVLPVALPCGHEACCLCWERYLNVK 241
>SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 577
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 400 QLFSEARVINPFRKPVIQRPKLPRRISTSGMEECEICFSVLPTSIMTGLE-CGHRFCTQC 576
+LF ++ +KP + R+ S C +C++ P S+ + C HR C +C
Sbjct: 50 RLFGRSKSYKGEKKP----ESVVRKPSGESCVICPVCYAQRPRSLFPDISTCEHRSCIEC 105
Query: 577 WCEYLT 594
+Y+T
Sbjct: 106 LRQYMT 111
>SB_2351| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-07)
Length = 137
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +1
Query: 385 DGDQDQLFSEARVINPFRKPVIQRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRF 564
+ D+D++ +V P K ++P R C +C + + + ECGHR
Sbjct: 22 NNDEDKMPEIEKVERPLTKNYFKKPPFEER-----KHLCPVCEDIFVSPVQIK-ECGHRL 75
Query: 565 CTQCW 579
C C+
Sbjct: 76 CQHCY 80
>SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11)
Length = 471
Score = 31.5 bits (68), Expect = 0.55
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 496 ECEICFSVLPTSIMTGLECGHRFCTQC 576
EC++CF++L + T L CGH FC C
Sbjct: 329 ECKLCFNLLLEPV-TSL-CGHSFCRDC 353
>SB_4328| Best HMM Match : Vicilin_N (HMM E-Value=0.39)
Length = 738
Score = 31.5 bits (68), Expect = 0.55
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +1
Query: 145 NESSGDDVDFAMDVETHSTRERQT----ELEEYPYEVLST-EEIVQHMVDCIKEVNTVVE 309
+E S +DV ++ VE H +++ E++ P E+ + EE VQH + I+E TV+E
Sbjct: 293 DEPSDEDVTESLRVEDHEKYSKKSLASYEIDLSPDELFAIHEEGVQHKISSIREKMTVIE 352
>SB_14437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 31.1 bits (67), Expect = 0.73
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 154 SGDDVDFAMDVETHSTRERQTELEEYPYEVLSTEEIVQHMVDCIKEVNT 300
SGDD+ + +HST E + EL+ E +E+++H + + V T
Sbjct: 155 SGDDLPHGLRSTSHSTEELRMELKLLDSEEKHLDELIEHAREELTSVKT 203
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 30.7 bits (66), Expect = 0.97
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 496 ECEICFSVLPTSIM-TGLECGHRFCTQCWCEYL 591
EC +C + P + M T L C RFC+ C +Y+
Sbjct: 1004 ECIVCMDLKPENRMITMLNCQCRFCSDCVSQYV 1036
>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 346
Score = 30.7 bits (66), Expect = 0.97
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQC 576
C IC VL +I T CGH FC C
Sbjct: 18 CNICVGVLENAITT--ICGHSFCESC 41
>SB_49650| Best HMM Match : RVT_1 (HMM E-Value=1.3)
Length = 379
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -1
Query: 270 MLDNLLCRQNLVRILLKLSLSFPC---TMSFNVHCKVDIVSTRL 148
+L+ LLC + I+LKL + F C T F CK+ + + RL
Sbjct: 15 LLEGLLCHSTVGSIILKLFVVFLCFRNTAVFRSSCKLPVTNFRL 58
>SB_14489| Best HMM Match : DUF789 (HMM E-Value=5.6)
Length = 382
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 134 WTRVMSLVETMSTLQWTLKLIVQGKDKLSLRSILTRFCLQRRLSN 268
W R + +V S +T+ ++ G+ SLR L + C++ LSN
Sbjct: 27 WNRQLIIVVRESVTSFTVTTVLPGERHESLRDALAKSCIELCLSN 71
>SB_10780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 448 IQRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFC 567
IQ P+ PR S +C +C + +T CGH FC
Sbjct: 85 IQAPEPPRAFSND--RQCPVC--ITDARFLTMTNCGHEFC 120
>SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21)
Length = 380
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 475 ISTSGMEECEICFSVLPTSIMTGLECGHRFCTQC 576
+S+ EEC IC L +T C H FCT C
Sbjct: 57 LSSGVSEECPICLDPLDDPSIT--RCAHVFCTGC 88
>SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 306
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCWCEYLTTK 600
C IC VL +++T CGH FC C ++ K
Sbjct: 18 CGICAEVLERAVLT--PCGHSFCGVCLETWMNAK 49
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +1
Query: 499 CEICFSVLPTSI--MTGLE-CGHRFCTQCWCEYL 591
C +C+ + SI + L C H FC +CW YL
Sbjct: 654 CRVCYEMATFSIEGFSVLNACSHWFCDECWQAYL 687
>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 29.9 bits (64), Expect = 1.7
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +1
Query: 163 DVDFAMDVETHSTRERQTELEEYPYEVLSTEEI-VQHMVDCIKEVNTVVEIPATTTRILL 339
+V+ M+VET E + E+E EV + +E+ + V+ KEV T E+ T + +
Sbjct: 14 EVETEMEVETEMEVETEKEVET-EKEVETEKEVETEKEVETEKEVETKKEV--ETEKEVE 70
Query: 340 NHFKWDKEKLMERFYDGDQDQLFSEARV 423
KW +E +R G + ++ +E V
Sbjct: 71 GSRKWRREGSGDRERSGGEKEVETEKEV 98
>SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 496 ECEICFSVLPTSIMTGLECGHRFCTQC 576
EC IC I ECGHRFC C
Sbjct: 25 ECPICQLAFRDPIQIE-ECGHRFCQSC 50
>SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 496 ECEICFSVLPTSIMTGLECGHRFCTQCWCEYLTTK 600
EC IC ++++ CGH FC C +L T+
Sbjct: 62 ECNICLDTARDAVIS--MCGHLFCWPCLHRWLETR 94
>SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)
Length = 634
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 300 SVHFFNAVNHMLDNLLCRQNLVRILLKLSLSFPCTMSFNVHCKV 169
SV F N ++ L +R+ LS S C+++F V CK+
Sbjct: 166 SVLFANGIHQKCRKRLKYAECLRVYAPLSYSVTCSLTFLVFCKI 209
>SB_12595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQC 576
C C +L ++ T +CGHR+C C
Sbjct: 61 CSKCGFILKDAVQT--DCGHRYCLSC 84
>SB_37498| Best HMM Match : MATH (HMM E-Value=1.8e-28)
Length = 562
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCW 579
C IC VL + T CGHR C C+
Sbjct: 34 CTICKHVLQEPLQT--TCGHRICESCF 58
>SB_41147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 332
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 496 ECEICFSVLPTSIMTGLECGHRFCTQC 576
+C IC + T +CGHRFC C
Sbjct: 41 QCPICQLPFRDPVQTR-DCGHRFCESC 66
>SB_79| Best HMM Match : rve (HMM E-Value=1.4e-14)
Length = 271
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/63 (22%), Positives = 33/63 (52%)
Frame = +2
Query: 65 HYKSYKFS*SLQRWIRKMTRKTMWTRVMSLVETMSTLQWTLKLIVQGKDKLSLRSILTRF 244
H++S F+ S+ RW+ + + +++ ++ ET +W L + D + ++ +T F
Sbjct: 168 HHRSQAFAESVHRWLAQRLFRAQYSKELASGET--NREWVTALPIVISDIKATKTRMTGF 225
Query: 245 CLQ 253
L+
Sbjct: 226 ALE 228
>SB_47038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 876
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = +2
Query: 65 HYKSYKFS*SLQRWIRKMTRKTMWTRVMSLVETMSTLQWTLKLIVQGKDKLSLRSILTRF 244
H++S F+ S RW+ + + +++ ++ ET +W L + DK + ++ +T F
Sbjct: 747 HHRSQAFAESFHRWLAQRLFRARYSKELASGET--NREWVTALPIGVSDKNATKTRMTGF 804
>SB_28795| Best HMM Match : AP2 (HMM E-Value=3.9)
Length = 375
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = +2
Query: 65 HYKSYKFS*SLQRWIRKMTRKTMWTRVMSLVETMSTLQWTLKLIVQGKDKLSLRSILTRF 244
H++S F+ S RW+ + + +++ ++ ET +W L + DK + ++ +T F
Sbjct: 296 HHRSQAFAESFHRWLAQRLFRARYSKELASGET--NREWVTALPIGVSDKNATKTRMTGF 353
>SB_22297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/63 (22%), Positives = 33/63 (52%)
Frame = +2
Query: 65 HYKSYKFS*SLQRWIRKMTRKTMWTRVMSLVETMSTLQWTLKLIVQGKDKLSLRSILTRF 244
H++S F+ S+ RW+ + + +++ ++ ET +W L + D + ++ +T F
Sbjct: 168 HHRSQAFAESVHRWLAQRLFRAQYSKELASGET--NREWVTALPIVISDIKATKTRMTGF 225
Query: 245 CLQ 253
L+
Sbjct: 226 ALE 228
>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
Length = 843
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Frame = +1
Query: 499 CEICFSVL----PTSIMTGLECGHRFCTQC 576
C +C++ P I L+C H FCT+C
Sbjct: 330 CPLCYTAYGTGYPQRIPRILDCSHTFCTEC 359
>SB_1336| Best HMM Match : zf-C2H2 (HMM E-Value=2.9e-16)
Length = 298
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +1
Query: 148 ESSGDDVDFAMDVETHSTRERQTELEEYPYEVLSTEEIVQHMVDCIKEVNTVVEIPATT 324
E+S D + ++D T S R RQ L+ E+LS++E QH + + + +++ TT
Sbjct: 54 ENSIFDSESSIDSITSSLR-RQISLQITNNEILSSDERAQHQTENMVPSSQALDVEMTT 111
>SB_11628| Best HMM Match : DUF1014 (HMM E-Value=0.64)
Length = 423
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 518 TEKHISHSSIPDVDILLGSFGLCMTGFLNG 429
TEK++S S IL S+GL + FLNG
Sbjct: 386 TEKNVSPSGATSQSILRYSYGLDIARFLNG 415
>SB_10513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 134 WTRVMSLVETMSTLQWTLKLIVQGKDKLSLRSILTRFCLQRR 259
W+R L+ +T L++ + +LR L R C+Q R
Sbjct: 237 WSRQFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQMR 278
>SB_5292| Best HMM Match : GlnE (HMM E-Value=1.7)
Length = 325
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 465 SQEDINVWYGRM*NMFLSFTNLYYDWVGMWSQILHAMLV*IFNYEIME 608
++EDI YG L+FT ++ G+ +H +L + YE+ E
Sbjct: 223 AEEDITQQYGINQRSILNFTRYFHVVGGLPGDTMHDVLEGLLQYEVKE 270
>SB_57306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 27.9 bits (59), Expect = 6.8
Identities = 24/79 (30%), Positives = 35/79 (44%)
Frame = +2
Query: 71 KSYKFS*SLQRWIRKMTRKTMWTRVMSLVETMSTLQWTLKLIVQGKDKLSLRSILTRFCL 250
+ Y S L R +RK ++ TR T S L TL+ K + RS+LTR
Sbjct: 55 RKYYTSSLLTRTLRKYNTSSLLTRTSRKYNTSSLLTRTLR-------KYNTRSLLTRTLR 107
Query: 251 QRRLSNIWLTALKK*TLSS 307
+ S++ L+K SS
Sbjct: 108 KYNTSSLLTRTLRKYNTSS 126
>SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1496
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 394 QDQLFSEARVINPFRKPVIQRPKLPRRI 477
+D + S+ +VI P KP I+RP PR I
Sbjct: 36 KDHISSQVKVIEP-SKPTIERPVAPRDI 62
>SB_5274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/53 (22%), Positives = 29/53 (54%)
Frame = +1
Query: 280 CIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQDQLFSEARVINPFR 438
C+K + ++ +P + R+L KE+L+ + +++L S+ R+++ R
Sbjct: 113 CLKNSSYLINVPISEVRLLSKERLLSKERLLSKVRLLSKERLLSKERLLSKER 165
>SB_37786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCW 579
C IC VL + + +C H C+ CW
Sbjct: 172 CAICLDVLEKPLSS--KCQHSCCSDCW 196
>SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 27.5 bits (58), Expect = 9.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 550 CGHRFCTQCWCEYLTT 597
CGHR CT+C+ + L++
Sbjct: 447 CGHRVCTKCYTKLLSS 462
>SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1094
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCW 579
C C V ++TG CGH CT+C+
Sbjct: 18 CSYCRKVYLHPLVTG--CGHVLCTKCY 42
>SB_51276| Best HMM Match : rve (HMM E-Value=1.4e-05)
Length = 324
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = +2
Query: 65 HYKSYKFS*SLQRWIRKMTRKTMWTRVMSLVETMSTLQWTLKLIVQGKDKLSLRSILTRF 244
H++S F+ S RW+ K + +++ ++ ET +W L + D + ++ +T F
Sbjct: 208 HHRSQAFAVSFHRWLAKRLFRAQYSKELASGET--NREWVTALPIVISDINATKTCMTGF 265
>SB_50665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCW 579
C IC VL + + +C H C+ CW
Sbjct: 168 CAICLDVLEKPLSS--KCQHSCCSDCW 192
>SB_46839| Best HMM Match : rve (HMM E-Value=7.3e-11)
Length = 565
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = +2
Query: 65 HYKSYKFS*SLQRWIRKMTRKTMWTRVMSLVETMSTLQWTLKLIVQGKDKLSLRSILTRF 244
H++S F+ S RW+ + + +++ ++ ET L+W L + D + ++ +T F
Sbjct: 225 HHRSQTFAESFHRWLAQRLFRVQYSKELASGET--NLEWVTALPIVISDINATKTRMTGF 282
>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCW 579
C IC VL + + +C H C+ CW
Sbjct: 76 CAICLDVLEKPLSS--KCQHSCCSDCW 100
>SB_38368| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-15)
Length = 846
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCW 579
C IC VL + + +C H C+ CW
Sbjct: 316 CAICLDVLEKPLSS--KCQHSCCSDCW 340
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCW 579
C IC VL + + +C H C+ CW
Sbjct: 642 CAICLDVLEKPLSS--KCQHSCCSDCW 666
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 343 HFKWDKEKLMERFYDGDQDQLFSEARVINPFRKPVIQR 456
H+ DK+K + Y+G++DQ + INP P++ R
Sbjct: 2149 HWTMDKKKNSWKLYNGNRDQYSTVTESINP---PILAR 2183
>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
Length = 398
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Frame = +1
Query: 493 EECEICFSVLPTSIMTGL-ECGHRFCTQC---WCEYLTT 597
+ C IC T L CGH++C C W E TT
Sbjct: 260 KSCPICLEEFTPETPTRLLVCGHKYCEPCLSRWLENNTT 298
>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
Length = 1199
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 453 LYDRFPEWIDNSSFRE 406
+YDR PE++DN FR+
Sbjct: 138 VYDRSPEYVDNHEFRD 153
>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 617
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +1
Query: 496 ECEICFSVL-PTSIMTGLECGHRFCTQC 576
EC IC P + GL CGH F C
Sbjct: 559 ECVICLDEFKPGCTLLGLPCGHSFHQHC 586
>SB_23299| Best HMM Match : zf-C3HC4 (HMM E-Value=5.9e-06)
Length = 418
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCW 579
C IC VL + + +C H C+ CW
Sbjct: 174 CAICLDVLEKPLSS--KCQHSCCSDCW 198
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 439 KPVIQRPKLPRRISTSGMEECEIC 510
KPV ++P+ P +S G +C IC
Sbjct: 1094 KPVPEKPQPPMALSGHGSTQCNIC 1117
>SB_22842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 757
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCW 579
C IC VL + + +C H C+ CW
Sbjct: 319 CAICLDVLEKPLSS--KCQHSCCSDCW 343
>SB_18762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 261
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCW 579
C IC VL + + +C H C+ CW
Sbjct: 25 CAICLDVLEKPLSS--KCQHSCCSDCW 49
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,082,279
Number of Sequences: 59808
Number of extensions: 409438
Number of successful extensions: 1296
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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