Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b17f
(609 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g27710.1 68416.m03460 zinc finger protein-related contains si... 70 1e-12
At2g16090.1 68415.m01845 zinc finger protein-related contains si... 69 3e-12
At4g34370.1 68417.m04883 IBR domain-containing protein similar t... 68 4e-12
At1g65430.1 68414.m07423 zinc finger protein-related contains we... 67 1e-11
At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE... 64 7e-11
At1g05890.1 68414.m00617 zinc finger protein-related contains lo... 63 2e-10
At2g31760.1 68415.m03878 zinc finger protein-related contains lo... 62 2e-10
At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger) fa... 62 3e-10
At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger) fa... 62 4e-10
At5g63750.1 68418.m08001 IBR domain-containing protein contains ... 51 5e-07
At5g63730.1 68418.m07999 IBR domain-containing protein contains ... 39 0.002
At1g05880.1 68414.m00616 expressed protein 38 0.004
At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger) fa... 37 0.012
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 36 0.021
At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger) fa... 36 0.028
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf... 34 0.064
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 34 0.085
At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger) fa... 33 0.20
At3g16030.1 68416.m02027 lectin protein kinase family protein co... 33 0.20
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 32 0.34
At3g14250.1 68416.m01804 zinc finger protein-related contains we... 32 0.34
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 31 0.45
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 31 0.45
At5g63740.1 68418.m08000 zinc finger protein-related 31 0.60
At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger) fa... 31 0.60
At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger) fa... 31 0.60
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 31 0.79
At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger) fa... 31 0.79
At3g45560.1 68416.m04921 zinc finger (C3HC4-type RING finger) fa... 31 0.79
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa... 31 0.79
At5g53910.1 68418.m06708 (S)-2-hydroxy-acid oxidase, peroxisomal... 30 1.0
At5g18420.3 68418.m02170 expressed protein non-consensus GC dono... 30 1.0
At5g18420.2 68418.m02169 expressed protein non-consensus GC dono... 30 1.0
At5g18420.1 68418.m02168 expressed protein non-consensus GC dono... 30 1.0
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil... 30 1.0
At3g45555.1 68416.m04920 zinc finger (C3HC4-type RING finger) fa... 30 1.0
At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger) fa... 30 1.0
At5g08730.1 68418.m01037 IBR domain-containing protein contains ... 30 1.4
At3g53690.1 68416.m05929 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr... 30 1.4
At5g63760.2 68418.m08003 IBR domain-containing protein contains ... 29 1.8
At5g63760.1 68418.m08002 IBR domain-containing protein contains ... 29 1.8
At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger) fa... 29 1.8
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 29 1.8
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing... 29 2.4
At1g78420.1 68414.m09138 expressed protein 29 2.4
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa... 29 2.4
At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger) fa... 29 2.4
At5g65710.1 68418.m08270 leucine-rich repeat transmembrane prote... 29 3.2
At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger) fa... 29 3.2
At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger) fa... 29 3.2
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 29 3.2
At1g73760.1 68414.m08540 zinc finger (C3HC4-type RING finger) fa... 29 3.2
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 29 3.2
At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger) fa... 28 4.2
At3g13228.1 68416.m01663 zinc finger (C3HC4-type RING finger) fa... 28 4.2
At2g28840.1 68415.m03506 ankyrin repeat family protein contains ... 28 4.2
At1g18190.1 68414.m02262 expressed protein similar to golgin-84 ... 28 4.2
At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger) fa... 28 5.6
At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger) fa... 28 5.6
At3g53920.1 68416.m05957 RNA polymerase sigma subunit SigC (sigC... 28 5.6
At3g43180.1 68416.m04557 zinc finger (C3HC4-type RING finger) fa... 28 5.6
At2g45135.1 68415.m05617 expressed protein ; expression supporte... 28 5.6
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 28 5.6
At5g28823.1 68418.m03544 hypothetical protein 27 7.4
At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger) fa... 27 7.4
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 27 7.4
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 27 7.4
At2g44410.1 68415.m05523 expressed protein 27 7.4
At2g25360.1 68415.m03035 zinc finger protein-related contains we... 27 7.4
At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger) fa... 27 7.4
At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger) fa... 27 7.4
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa... 27 7.4
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa... 27 7.4
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa... 27 7.4
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa... 27 7.4
At1g17145.1 68414.m02090 expressed protein 27 7.4
At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger) fa... 27 7.4
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 27 9.7
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 27 9.7
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 27 9.7
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 27 9.7
At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger) fa... 27 9.7
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 27 9.7
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 27 9.7
At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) fa... 27 9.7
>At3g27710.1 68416.m03460 zinc finger protein-related contains
similarity to zinc finger proteins and Pfam domain,
PF01485: IBR domain
Length = 537
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Frame = +1
Query: 238 EVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQDQLFSEA 417
+V+ E +V + + V ++ + R LL +++W+ EKL F D +D++FS A
Sbjct: 44 QVIKKESLVAAQKEILVRVMELLSVKENQARTLLIYYQWNVEKLFSVFADQGKDRMFSCA 103
Query: 418 RVINPFRKPVIQRPKLPRRISTSGMEECEICFSV-LPTSIMTGLECGHRFCTQCWCEYLT 594
+ F +P +++ +C++C LP+++MT +ECGHRFC CW + T
Sbjct: 104 G-LTVF---------VPSLVTSKKTMKCDVCMEDDLPSNVMTRMECGHRFCNDCWIGHFT 153
Query: 595 TK 600
K
Sbjct: 154 VK 155
>At2g16090.1 68415.m01845 zinc finger protein-related contains
similarity to zinc finger proteins and Pfam domain,
PF01485: IBR domain
Length = 593
Score = 68.5 bits (160), Expect = 3e-12
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Frame = +1
Query: 238 EVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQDQLFSEA 417
+V++ E ++ + ++ V ++ + R LL H++WD EKL + +D LFS A
Sbjct: 42 KVITKESLLAAQREDLRRVMELLSVKEHHARTLLIHYRWDVEKLFAVLVEKGKDSLFSGA 101
Query: 418 RVINPFRKPVIQRPKLPRRIS-TSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCEYLT 594
V +++ +S +S M C+IC +P +T ++CGH FC CW + T
Sbjct: 102 GVT------LLENQSCDSSVSGSSSMMSCDICVEDVPGYQLTRMDCGHSFCNNCWTGHFT 155
Query: 595 TK 600
K
Sbjct: 156 VK 157
>At4g34370.1 68417.m04883 IBR domain-containing protein similar to
SP|Q94981 Ariadne-1 protein (Ari-1) {Drosophila
melanogaster}; contains Pfam profile PF01485: IBR domain
Length = 597
Score = 68.1 bits (159), Expect = 4e-12
Identities = 37/121 (30%), Positives = 56/121 (46%)
Frame = +1
Query: 238 EVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQDQLFSEA 417
+V++ E ++ + + V ++ I R LL H++WD EKL F + +D LFS A
Sbjct: 42 QVITQESLLAAQREDLLRVMELLSIKEHHARTLLIHYQWDVEKLFAVFVEKGKDSLFSGA 101
Query: 418 RVINPFRKPVIQRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCEYLTT 597
V V S C++C LP MT ++CGH FC CW E+ T
Sbjct: 102 GVT------VFDYQYGNSSFPQSSQMSCDVCMEDLPGDHMTRMDCGHCFCNNCWTEHFTV 155
Query: 598 K 600
+
Sbjct: 156 Q 156
>At1g65430.1 68414.m07423 zinc finger protein-related contains weak
similarity to zinc finger proteins and a Pfam:PF01485
IBR domain
Length = 567
Score = 66.9 bits (156), Expect = 1e-11
Identities = 36/121 (29%), Positives = 60/121 (49%)
Frame = +1
Query: 235 YEVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQDQLFSE 414
Y VLS +I + D I ++TV+ I ++ ILL H+ W ++ + ++ D++++
Sbjct: 51 YSVLSEADICKLQEDDISRISTVLSISRNSSAILLRHYNWCVSRVHDEWF-ADEEKVRDA 109
Query: 415 ARVINPFRKPVIQRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCEYLT 594
++ KPV+ P T G +C ICF + + CGH FC CW Y+T
Sbjct: 110 VGLLE---KPVVDFP-------TDGELDCGICFETFLSDKLHAAACGHPFCDSCWEGYIT 159
Query: 595 T 597
T
Sbjct: 160 T 160
>At2g31510.1 68415.m03850 IBR domain-containing protein /
ARIADNE-like protein ARI7 (ARI7) identical to
ARIADNE-like protein ARI7 [Arabidopsis thaliana]
GI:29125028; contains similarity to Swiss-Prot:Q94981
ariadne-1 protein (Ari-1) [Drosophila melanogaster];
contains Pfam profile PF01485: IBR domain
Length = 562
Score = 64.1 bits (149), Expect = 7e-11
Identities = 34/119 (28%), Positives = 56/119 (47%)
Frame = +1
Query: 241 VLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQDQLFSEAR 420
VL E+I +H +D I+ V+ V+ I ILL HF W ++ + ++ D++++
Sbjct: 62 VLREEDIRRHQMDNIERVSVVLSITEVEASILLRHFHWSVGRVHDEWF-ADEERVRKTVG 120
Query: 421 VINPFRKPVIQRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCEYLTT 597
++ P +L C ICF P + + CGH FCT CW Y++T
Sbjct: 121 ILESHVVPPSDDSELT----------CGICFDSYPPEKIASVSCGHPFCTTCWTGYIST 169
>At1g05890.1 68414.m00617 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 552
Score = 62.9 bits (146), Expect = 2e-10
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 2/153 (1%)
Frame = +1
Query: 145 NESSGDDVDFAM-DVETHSTRERQTELEEYPYEVLSTEEIVQHMVDCIKEVNTVVEIPAT 321
+++ D+ DF + +T + + Y VL E+I +H D + V+ V+ I
Sbjct: 24 DDNDSDETDFGFGEADTDDAAIIASYRSKSNYVVLKEEDIRRHQNDDVGRVSAVLSITDV 83
Query: 322 TTRILLNHFKWDKEKLMERFYDGDQDQLFSEARVINPFRKPVIQRPKLPRRISTSGME-E 498
LL H+ W K+ + ++ D++++ R + PV+ P G E
Sbjct: 84 EASTLLLHYHWSVSKVNDEWF-ADEERV---RRTVGILEGPVVTTP--------DGREFT 131
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCWCEYLTT 597
C ICF + + CGH FC CW Y++T
Sbjct: 132 CGICFDSYTLEEIVSVSCGHPFCATCWTGYIST 164
>At2g31760.1 68415.m03878 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 514
Score = 62.5 bits (145), Expect = 2e-10
Identities = 34/127 (26%), Positives = 62/127 (48%)
Frame = +1
Query: 220 LEEYPYEVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQD 399
L E Y ++ EEI++ D I+ V+T++ + +LL H+ W KL + ++ D++
Sbjct: 38 LSEKSYVIIKEEEILKLQRDDIERVSTILFLSQVEAIVLLLHYHWCVSKLEDEWFT-DEE 96
Query: 400 QLFSEARVINPFRKPVIQRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCW 579
++ + + ++PV+ T +C ICF + + CGH +C CW
Sbjct: 97 RI---RKTVGILKEPVVDVN------GTEVDIQCGICFESYTRKEIASVSCGHPYCKTCW 147
Query: 580 CEYLTTK 600
Y+TTK
Sbjct: 148 TGYITTK 154
>At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam:PF01485 IBR
domain
Length = 537
Score = 62.1 bits (144), Expect = 3e-10
Identities = 34/125 (27%), Positives = 63/125 (50%)
Frame = +1
Query: 226 EYPYEVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQDQL 405
E Y V+ E+I++ D I++V+TV+ + + +LL H+ W KL + ++ D++++
Sbjct: 58 EKSYVVVKEEDILKLQRDDIEQVSTVLSVSQVESIVLLLHYHWCVSKLEDEWFT-DEERI 116
Query: 406 FSEARVINPFRKPVIQRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCE 585
+ + ++PV+ T +C ICF + + CGH +C CW
Sbjct: 117 ---RKTVGILKEPVVDVN------GTEVDIQCGICFESYTRKEIARVSCGHPYCKTCWTG 167
Query: 586 YLTTK 600
Y+TTK
Sbjct: 168 YITTK 172
>At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain,
PF01485: IBR domain
Length = 543
Score = 61.7 bits (143), Expect = 4e-10
Identities = 32/130 (24%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
Frame = +1
Query: 226 EYPYEVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQDQL 405
E Y +L E+I++ D I+ V++++ + +LL H+ W K+ + ++ D++++
Sbjct: 40 EKSYVILKEEDILKLQRDDIERVSSILSLSQVEVIVLLLHYNWCVSKVEDEWFT-DEERI 98
Query: 406 FSEARVINPFRKPVI-----QRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCT 570
+ + ++PV+ ++ K R+++ +C ICF + + CGH +C
Sbjct: 99 ---RKAVGLLKEPVVDFNGGEKDKKCRKVNI----QCGICFESYTREEIARVSCGHPYCK 151
Query: 571 QCWCEYLTTK 600
CW Y+TTK
Sbjct: 152 TCWAGYITTK 161
>At5g63750.1 68418.m08001 IBR domain-containing protein contains a
Prosite:PS00518 Zinc finger, C3HC4 type (RING finger),
signature and Pfam:PF01485 IBR domain
Length = 536
Score = 51.2 bits (117), Expect = 5e-07
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Frame = +1
Query: 226 EYPYEVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQDQL 405
E PY VL+ +++ +M I E++ + + +LL +WD ++ E F + +++
Sbjct: 6 EGPYSVLTRDQLKGNMKKQIAEISEIFSLSKPDATVLLMFLRWDSHEVSE-FLVENNEKV 64
Query: 406 FSEARVINPFRKPVIQRPKLPRRISTSGMEECEICFSVLPTS--IMTGLECGHRFCTQCW 579
SE+ + KPV+ P + C ICF +++ C H FC CW
Sbjct: 65 LSESGL-----KPVVVDPNQ----DLYKISSCGICFKTCDDGDYLISTPFCSHMFCKSCW 115
Query: 580 CEYL 591
+YL
Sbjct: 116 RKYL 119
>At5g63730.1 68418.m07999 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster] and Pfam:PF01485 IBR
domain
Length = 506
Score = 39.1 bits (87), Expect = 0.002
Identities = 31/120 (25%), Positives = 57/120 (47%)
Frame = +1
Query: 232 PYEVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQDQLFS 411
PY VL+ EI M I E++ + I + +LL + +WD ++ ER + ++++L
Sbjct: 8 PYSVLTRNEITVKMKKQINEISDIFFISNSDATVLLMYLRWDSLRVSERLGE-NKEKLLM 66
Query: 412 EARVINPFRKPVIQRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCEYL 591
++ + K V+ P P S +E F +++ C H+F ++ W EYL
Sbjct: 67 DSGL-----KSVMIDPS-PDSSSEISLETDVYEFDG-DNDLISMPFCSHKFDSKYWREYL 119
>At1g05880.1 68414.m00616 expressed protein
Length = 426
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Frame = +1
Query: 235 YEVLSTEEIVQHMVDC-IKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQDQLFS 411
Y + TEE ++ +++ ++ V+ + +LL+H +W+ + + +++ G Q S
Sbjct: 18 YATVLTEEDIRALMEIDVQSVSDFTSLSKAEATLLLSHLRWNVDCICKQWSAGAQSVRDS 77
Query: 412 EARVINPFRKPVIQRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCEYL 591
+ + P S C C P + + CGHR CT+CW ++
Sbjct: 78 VGLL-------ELDPP------SDDNEYFCGACGESHPHKNLASVSCGHRICTRCWTSHI 124
>At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 655
Score = 36.7 bits (81), Expect = 0.012
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 466 PRRISTSGMEECEICFSVLPTSIMTGLE-CGHRFCTQCWCEYLTTK 600
PR+ EEC ICF+ + M ++ C HRFC QC +++ K
Sbjct: 290 PRQAKAVLKEECAICFNDIVAEGMFSVDKCRHRFCFQCVKQHVEVK 335
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 35.9 bits (79), Expect = 0.021
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCWCEYLT 594
C IC +V P + L CGH FC QC CE LT
Sbjct: 919 CGIC-NVAPKDAVVSL-CGHVFCNQCICECLT 948
>At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 532
Score = 35.5 bits (78), Expect = 0.028
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 490 MEECEICFSVLPTSIMTGLECGHRFCTQCWCEYLTTK 600
+E C IC + +M L+C H+FC+ C Y+ K
Sbjct: 204 IENCSICCEDRQSEMMLSLKCTHKFCSHCMKTYVEGK 240
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/32 (31%), Positives = 13/32 (40%)
Frame = +1
Query: 493 EECEICFSVLPTSIMTGLECGHRFCTQCWCEY 588
++C I + CGH FC C EY
Sbjct: 379 QQCRIMIELAQGCNHMTCRCGHEFCYSCGAEY 410
>At3g27720.1 68416.m03461 zinc finger protein-related contains
Pfam:PF01485 IBR domain
Length = 493
Score = 34.3 bits (75), Expect = 0.064
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +1
Query: 169 DFAMDVETHSTRERQTELEEYPYEVLSTEEI-VQHMVDCIKEVNTVVEIPATTTRILLNH 345
D M +E +E +++ + EE +QH + +V + + R LL
Sbjct: 3 DEYMSLEEEEDNCYPSEFDDHDQMCSNAEESDLQHSREPTSQVMEFLSVTENQARTLLIQ 62
Query: 346 FKWDKEKLMERFYDGDQDQLFSEA 417
++W+ +KL + D +D LFS A
Sbjct: 63 YQWNVDKLFSVYTDQGKDVLFSRA 86
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1029
Score = 33.9 bits (74), Expect = 0.085
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = +1
Query: 355 DKEKLMERFYDGDQDQLFSEARVINPFRKPVIQRPKLPRRISTSGMEECEICFSVLPTSI 534
D KL +RF G L E + + + +Q R G EC IC L ++
Sbjct: 750 DLNKLSKRFLSGKSSGLEREGKDVPS--EAFVQEVVEELRKGEQG--ECPICLEALEDAV 805
Query: 535 MTGLECGHRFCTQC 576
+T C HR C +C
Sbjct: 806 LT--PCAHRLCREC 817
>At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 346
Score = 32.7 bits (71), Expect = 0.20
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 499 CEICFS-VLPTSIMTGLE-CGHRFCTQCWCEYLTTK 600
C ICF+ VL M + CGH+FC +C Y+ K
Sbjct: 155 CSICFNNVLEAEKMFSVAICGHQFCVECVKHYIEVK 190
>At3g16030.1 68416.m02027 lectin protein kinase family protein
contains Pfam domains PF00069: Protein kinase domain and
PF01453: Lectin (probable mannose binding)
Length = 850
Score = 32.7 bits (71), Expect = 0.20
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +2
Query: 365 SLWNVFMMETRISCSLKLELSIHSGNLSYKGQSFPGGYQRLVWKNVKYVSQFYQPLL*LG 544
SL + ET + +LKL + SGNL + G +R +W++ Y + P + LG
Sbjct: 106 SLLELSSTETTGNTTLKL---LDSGNLQLQEMDSDGSMKRTLWQSFDYPTDTLLPGMKLG 162
Query: 545 WNVVT 559
+NV T
Sbjct: 163 FNVKT 167
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 31.9 bits (69), Expect = 0.34
Identities = 27/80 (33%), Positives = 38/80 (47%)
Frame = +1
Query: 355 DKEKLMERFYDGDQDQLFSEARVINPFRKPVIQRPKLPRRISTSGMEECEICFSVLPTSI 534
D +L++R Y+ D SEA V R P R +L R+ +S C C +
Sbjct: 708 DHPQLVKR-YNSDPVGKVSEAAVR---RLPREARSRLINRLESSSAI-CYECNEPPEKPV 762
Query: 535 MTGLECGHRFCTQCWCEYLT 594
+T CGH FC +C EY+T
Sbjct: 763 VT--LCGHIFCYECVLEYIT 780
>At3g14250.1 68416.m01804 zinc finger protein-related contains weak
similarity to zinc finger proteins and Pfam:PF01485 IBR
domain
Length = 308
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +1
Query: 499 CEICFSVLPTS-IMTGL-ECGHRFCTQCWCEYLTTK 600
C IC P+S I G C H +CT C Y+ TK
Sbjct: 95 CMICMDEKPSSDIFRGTTNCTHAYCTDCTVRYVATK 130
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 31.5 bits (68), Expect = 0.45
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCWCEYLTTK 600
C IC ++ + +T CGH FC C +L K
Sbjct: 52 CPICMQIIKDAFLTA--CGHSFCYMCIITHLRNK 83
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 31.5 bits (68), Expect = 0.45
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 496 ECEICFSVLPTSIMTGLECGHRFCTQCWCEYL 591
EC ICF + I+T CGH FC C +L
Sbjct: 27 ECNICFELAQDPIVT--LCGHLFCWPCLYRWL 56
>At5g63740.1 68418.m08000 zinc finger protein-related
Length = 226
Score = 31.1 bits (67), Expect = 0.60
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 550 CGHRFCTQCWCEYLTT 597
C H+FC CW EYL T
Sbjct: 150 CTHKFCKTCWREYLET 165
>At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger)
family protein contains similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 486
Score = 31.1 bits (67), Expect = 0.60
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 496 ECEICFSVLPTSIMTGLECGHRFCTQC 576
+C IC ++ + T +EC HRFC +C
Sbjct: 135 QCPICLGIIKKT-RTVMECLHRFCREC 160
>At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger)
family protein low similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 427
Score = 31.1 bits (67), Expect = 0.60
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 496 ECEICFSVLPTSIMTGLECGHRFCTQC 576
+C IC ++ + T +EC HRFC +C
Sbjct: 102 QCSICLGIIRKT-RTVMECLHRFCREC 127
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 30.7 bits (66), Expect = 0.79
Identities = 20/74 (27%), Positives = 31/74 (41%)
Frame = +1
Query: 355 DKEKLMERFYDGDQDQLFSEARVINPFRKPVIQRPKLPRRISTSGMEECEICFSVLPTSI 534
D + L RF D + D + S+ + + VIQ + +EC IC +
Sbjct: 999 DLDSLARRFLDNNPDSV-SQNAPSRAYIEEVIQD------LRDGNSKECPICLESADDPV 1051
Query: 535 MTGLECGHRFCTQC 576
+T C HR C +C
Sbjct: 1052 LT--PCAHRMCREC 1063
>At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 243
Score = 30.7 bits (66), Expect = 0.79
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 436 RKPVIQRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCEYL 591
+KP + + + SG +C IC ++T CGH FC C ++L
Sbjct: 23 QKPNLTTAPTAGQANESGCFDCNICLDTAHDPVVT--LCGHLFCWPCIYKWL 72
>At3g45560.1 68416.m04921 zinc finger (C3HC4-type RING finger)
family protein contains Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518
Length = 503
Score = 30.7 bits (66), Expect = 0.79
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 475 ISTSGMEECEICFSV-LPTSIMTGLE-CGHRFCTQCWCEYLTTK 600
++ S + C ICF+ M ++ CGH+FC +C +Y+ +
Sbjct: 147 MAPSQRKTCGICFNDDFKAEHMFSVDLCGHQFCVECMTQYIKVR 190
>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 772
Score = 30.7 bits (66), Expect = 0.79
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1
Query: 472 RISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCEYLTT 597
R ST +C IC +T CGH FC C +YL T
Sbjct: 236 RYSTPSPVQCPICLEYPLCPQITS--CGHIFCFPCILQYLLT 275
>At5g53910.1 68418.m06708 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative contains Pfam
profile: PF00097 zinc finger, C3HC4 type (RING finger)
Length = 230
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 469 RRISTSGMEECEICFSVLPTSI-MTGLECGHRFCTQCWCEYLTTK 600
R +SG +C ICF T + L CGH F +C E+ +
Sbjct: 162 RETYSSGEYKCAICFQEFKTGREVATLLCGHEFDNKCIMEWFKVR 206
>At5g18420.3 68418.m02170 expressed protein non-consensus GC donor
splice site at exon 1, unknown (C40) protein, Homo
sapiens, EMBL:AF103798
Length = 439
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 184 VETHSTRERQTELEEYPYEVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLNH 345
VE + TE+ +Y YE L ++ H ++ + + T VE+P R+ + +
Sbjct: 317 VEILTKLNNSTEINDY-YEALGNMDMSLHSMEVVNRLTTAVELPKDFIRMYITN 369
>At5g18420.2 68418.m02169 expressed protein non-consensus GC donor
splice site at exon 1, unknown (C40) protein, Homo
sapiens, EMBL:AF103798
Length = 442
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 184 VETHSTRERQTELEEYPYEVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLNH 345
VE + TE+ +Y YE L ++ H ++ + + T VE+P R+ + +
Sbjct: 320 VEILTKLNNSTEINDY-YEALGNMDMSLHSMEVVNRLTTAVELPKDFIRMYITN 372
>At5g18420.1 68418.m02168 expressed protein non-consensus GC donor
splice site at exon 1, unknown (C40) protein, Homo
sapiens, EMBL:AF103798
Length = 441
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 184 VETHSTRERQTELEEYPYEVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLNH 345
VE + TE+ +Y YE L ++ H ++ + + T VE+P R+ + +
Sbjct: 320 VEILTKLNNSTEINDY-YEALGNMDMSLHSMEVVNRLTTAVELPKDFIRMYITN 372
>At5g17930.1 68418.m02102 MA3 domain-containing protein low
similarity to SP|Q9P6R9 Cell cycle control protein cwf22
{Schizosaccharomyces pombe}; contains Pfam profile
PF02847: MA3 domain
Length = 707
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 119 TRKTMWTRVMSLVETMSTLQWTLKLIVQGKDKLSLRSILTRFCLQRRLSNIWLTAL 286
+RK ++ +MS + + + L+L + GK + +L CLQ + N + T L
Sbjct: 509 SRKAIFCVIMSSEDYIDAFEKLLRLDLPGKQDREIMRVLVECCLQEKAFNKFYTVL 564
>At3g45555.1 68416.m04920 zinc finger (C3HC4-type RING finger)
family protein low similarity to UbcM4-interacting
protein 4 [Mus musculus] GI:13991706; contains Pfam
profiles PF00097: Zinc finger C3HC4 type (RING finger),
PF01485: IBR (In Between Ring fingers) domain
Length = 213
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 442 PVIQRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQC 576
PV +R P ++ M + E+ S L + +CG RFC C
Sbjct: 97 PVTERFYCPNPRCSALMSKIELSKSTLEDGFVRCFQCGERFCINC 141
>At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domains PF00533: BRCA1 C Terminus (BRCT) domain and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 453
Score = 30.3 bits (65), Expect = 1.0
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Frame = +1
Query: 352 WDKEKLMERFYDGDQDQLFSEARVINPFRKPVIQRPKLPRRISTSGMEE------CEICF 513
WD +++ E + +F R +P KP Q R T E+ C IC+
Sbjct: 248 WDVDEI-EESENWSHSAVFKRPRSFSPEIKP--QDDDESTREETEATEKAPAQVSCIICW 304
Query: 514 SVLPTSIMTGLECGHRFCTQC---WCEYLTTK 600
+ +S L CGHRFC C W + L ++
Sbjct: 305 TEFSSSRGI-LPCGHRFCYSCIQKWADRLVSE 335
>At5g08730.1 68418.m01037 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster]
Length = 500
Score = 29.9 bits (64), Expect = 1.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 550 CGHRFCTQCWCEYLT 594
C H+F T CW EYL+
Sbjct: 96 CSHKFSTTCWSEYLS 110
>At3g53690.1 68416.m05929 zinc finger (C3HC4-type RING finger)
family protein contains a Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518 and a IBR domain,
Pfam:PF01485
Length = 320
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 442 PVIQRPKLPRRISTSGMEECEICF---SVLPTSIMTGLECGHRFCTQCWCEYLTTK 600
P I R K S + +CEIC S++ + + G C H +C C +Y+ K
Sbjct: 96 PPIHREKGQSSSSKTATFDCEICVDSKSIIESFRIGG--CSHFYCNDCVSKYIAAK 149
>At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 408
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +1
Query: 442 PVIQRPKLPRRISTSGMEECEICFSVLPTS---IMTGLECGHRFCTQCWCEYLT 594
P KL + +CE C +V+ S + CGH+FC +C +++T
Sbjct: 318 PTADDIKLKALANQKMWRQCENCKNVIELSEGCMHITCRCGHQFCYKCGAKWIT 371
>At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 312
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 499 CEICF--SVLPTSIMTGLECGHRFCTQCWCEYLTTK 600
C IC ++ P I + CGH FC +C +++ K
Sbjct: 163 CSICSGDNIEPEQIFSVALCGHEFCMECVKQHIEVK 198
>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
protein (PEX10) identical to zinc-binding peroxisomal
integral membrane protein GI:4337011 from [Arabidopsis
thaliana]
Length = 381
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 478 STSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCEYLTTK 600
ST + +C +C S T CGH FC C E+ K
Sbjct: 320 STEAVGKCTLCLSTRQHP--TATPCGHVFCWSCIMEWCNEK 358
>At5g63760.2 68418.m08003 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster] and Pfam:PF01485 IBR
domain
Length = 452
Score = 29.5 bits (63), Expect = 1.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 550 CGHRFCTQCWCEYL 591
C H+FC CW +YL
Sbjct: 54 CSHKFCKACWSKYL 67
>At5g63760.1 68418.m08002 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster] and Pfam:PF01485 IBR
domain
Length = 452
Score = 29.5 bits (63), Expect = 1.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 550 CGHRFCTQCWCEYL 591
C H+FC CW +YL
Sbjct: 54 CSHKFCKACWSKYL 67
>At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 466
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 496 ECEICFSVLPTSIMTGLECGHRFCTQCWCEYL 591
+C IC ++ ++T C H FC C+ E++
Sbjct: 137 KCSICLNIWH-DVVTAAPCLHNFCNGCFSEWM 167
>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 496 ECEICFSVLPTSIMTGLECGHRFCTQCWCEYL 591
EC IC + I+T CGH FC C ++L
Sbjct: 22 ECNICLDLAQDPIVT--LCGHLFCWPCLYKWL 51
>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
profile PF03105: SPX domain, weak hit to PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 335
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +1
Query: 439 KPVIQRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCWC 582
+PV++ LP I C IC + L+CGH FC C C
Sbjct: 212 QPVLKL-MLPNSIELEYDLTCAICLETVFNPY--ALKCGHIFCNSCAC 256
>At1g78420.1 68414.m09138 expressed protein
Length = 401
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +1
Query: 358 KEKLMERFYDGDQDQLFSEARVINPFRKPVIQRPKLP----RRISTSGMEECEICFSVLP 525
K +++E Y Q ++ + RK +++ P S +EEC ICF P
Sbjct: 8 KRQVVEERYTKPQGLYVNKDVDVKKLRKLIVESKLAPCYPGDDESCHDLEECPICFLYYP 67
Query: 526 TSIMTGLECGHRFCTQCWCE 585
S+ C CT+C+ +
Sbjct: 68 -SLNRSRCCMKSICTECFLQ 86
>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 645
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 478 STSGMEECEICFSVLPTSIMTG-LECGHRFCTQCWCEYLTTK 600
S+ +E C +C G LECGH F +QC E+L K
Sbjct: 585 SSQEVEPCCVCQEEYKEEEEIGRLECGHDFHSQCIKEWLKQK 626
>At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger)
family protein contains a Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518
Length = 688
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 490 MEECEICFSVLPTSIMTGLECGHRFCTQCWCEY 588
+ EC ICFS L C H FC +C Y
Sbjct: 375 LHECCICFSESAGIDFVKLPCQHFFCLKCMKTY 407
>At5g65710.1 68418.m08270 leucine-rich repeat transmembrane protein
kinase, putative
Length = 993
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 307 EIPATTTRILLNHFKWDKEKLMERFYDGDQDQLFSEARVINP 432
EIPA R+ LN F KL + G Q +F + + NP
Sbjct: 570 EIPAELLRLKLNQFNVSDNKLYGKIPSGFQQDIFRPSFLGNP 611
>At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +1
Query: 400 QLFSEARVINPFRKPVIQRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCW 579
+L+ E +KP +P + +C IC + ++T CGH FC C
Sbjct: 15 ELYGEGAFCFKSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVT--LCGHLFCWPCI 72
Query: 580 CEYL 591
++L
Sbjct: 73 HKWL 76
>At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +1
Query: 400 QLFSEARVINPFRKPVIQRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCW 579
+L+ E +KP +P + +C IC + ++T CGH FC C
Sbjct: 15 ELYGEGAFCFKSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVT--LCGHLFCWPCI 72
Query: 580 CEYL 591
++L
Sbjct: 73 HKWL 76
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 406 FSEARVINPFRKPVIQRPKLPRRISTSG-MEECEICFSVLPTSIMTGLECGHRFCTQC 576
FS +R+ N F V P +++S++ ++ C IC S P ++ G CGH+ C +C
Sbjct: 415 FSSSRIPN-FEPSVPPYPFESKQMSSADDIQLCPICLSN-PKNMAFG--CGHQTCCEC 468
>At1g73760.1 68414.m08540 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 367
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 439 KPVIQRPKLPRRISTSGMEECEICFSVLPTSIMTG-LECGHRFCTQCWCEYLTTK 600
K +++ K R+ +T +C IC G L CGHRF C ++L K
Sbjct: 299 KSCLRKVKPCRQDTTVADRKCIICQDEYEAKDEVGELRCGHRFHIDCVNQWLVRK 353
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 28.7 bits (61), Expect = 3.2
Identities = 23/80 (28%), Positives = 39/80 (48%)
Frame = +1
Query: 355 DKEKLMERFYDGDQDQLFSEARVINPFRKPVIQRPKLPRRISTSGMEECEICFSVLPTSI 534
D +L++R Y+ D SE V ++ ++ L R+ +S + C +C +
Sbjct: 637 DHPQLVKR-YNSDSVGKVSEEAVKKLPKEDLVS---LLSRLESSPI--CCVCHDPPEDPV 690
Query: 535 MTGLECGHRFCTQCWCEYLT 594
+T CGH FC QC +Y+T
Sbjct: 691 VT--LCGHIFCYQCVSDYIT 708
>At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 691
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +1
Query: 478 STSGMEECEICFSVLPTSIMTG-LECGHRFCTQCWCEYLTTK 600
S E C +C G LECGH F +QC E+L K
Sbjct: 630 SPQDAEPCCVCQEEYTEGEDMGTLECGHEFHSQCIKEWLKQK 671
>At3g13228.1 68416.m01663 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 325
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 460 KLPRRISTSGMEECEICFSVLPTS-IMTGLECGHRFCTQCWCEYLTT 597
K+ +I+ +G E C IC I+ L CGH F +C ++ T
Sbjct: 263 KIYDKINYTG-ERCTICLEEFNAGGILVALPCGHDFDDECAVKWFET 308
>At2g28840.1 68415.m03506 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 456
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 484 SGMEECEICFSVLPTSIMTGLECGHRFCTQC 576
S E C ICF + T + +CGH+ C QC
Sbjct: 314 SDTELCCICFEQVCTIEVK--DCGHQMCAQC 342
>At1g18190.1 68414.m02262 expressed protein similar to golgin-84
{Homo sapiens} (GI:4191344)
Length = 668
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 139 SGNESSGDDVDFAMDVETHSTRERQTELEEYPYEVLSTEEIVQHMVDCIKEVNTVV 306
S S + D+ D T S RERQ E E + E++ V IKE +V
Sbjct: 285 SSLSSDESESDYESDSSTDSERERQREERRRRRERVFAEKVATKAVAVIKERENMV 340
>At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 617
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCW 579
C IC + I T CGH FC +C+
Sbjct: 129 CSICIQLPERPITT--PCGHNFCLKCF 153
>At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger C3HC4 type (RING finger), PF02182: YDG/SRA
domain
Length = 465
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCWCEYL 591
C +C + LP +T L CGH FC +C+ +++
Sbjct: 109 CSLC-NQLPDRPVTIL-CGHNFCLKCFDKWI 137
>At3g53920.1 68416.m05957 RNA polymerase sigma subunit SigC (sigC) /
sigma factor 3 (SIG3) identical to sigma factor SigC
[Arabidopsis thaliana] GI:5478585, sigma factor 3 (SIG3)
[Arabidopsis thaliana] GI:2353175, plastid RNA
polymerase sigma-subunit [Arabidopsis thaliana]
GI:2398853; contains Pfam profiles PF04545: Sigma-70,
region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70
region 2
Length = 571
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 65 HYKSYKFS*SLQRWIRKMTRKTMWTRVMSLVETMSTLQWTLKLIVQGKDKL 217
H + YKFS +Q WIRK + TM +R V S++ T+ I + + L
Sbjct: 378 HTRGYKFSTYVQYWIRK-SMSTMVSRHARGVHIPSSIIRTINHIQKARKTL 427
>At3g43180.1 68416.m04557 zinc finger (C3HC4-type RING finger)
family protein contains Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518
Length = 191
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 499 CEICFS--VLPTSIMTGLECGHRFCTQCWCEYLTTK 600
C ICF V + + CGH+FC C +++ ++
Sbjct: 59 CRICFDEDVKAEQMYSVALCGHQFCVDCVKQHIESR 94
>At2g45135.1 68415.m05617 expressed protein ; expression supported
by MPSS
Length = 304
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 451 QRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQC 576
+R K R+I +E C C SV + ++ C HRFC +C
Sbjct: 164 RRYKSGRKIPIIAIE-CRRCLSV-SSPVVIADPCMHRFCVKC 203
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 1287
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 478 STSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCEYLT 594
S + + C IC P + + CGH FC QC E LT
Sbjct: 986 SDASLAICGICNDA-PEDAVASV-CGHVFCKQCIYERLT 1022
>At5g28823.1 68418.m03544 hypothetical protein
Length = 568
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 421 VINPFRKPVIQRPKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCW 579
+ P +PV+QR LP R S + SVLP I+ ++ TQ W
Sbjct: 98 IATPTIEPVVQRSPLPLRCRLSKELGRFLATSVLPLIILQQVKLTDTSSTQRW 150
>At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 193
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 475 ISTSGMEECEICFSVLPTSIMTGLECGHRFCTQC 576
+ + G +C IC + ++T CGH FC C
Sbjct: 13 VDSGGDFDCNICLDQVRDPVVT--LCGHLFCWPC 44
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 265 QHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGD 393
+ +VD IKE N E+P + LL +E+L R Y GD
Sbjct: 417 EEVVDAIKEGN---ELPVELLQTLLKMAPTSEEELKLRLYSGD 456
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 148 ESSGDDVDFAMDVETHST-RERQTELEEYPYEV-LSTEEIVQ 267
+ + DD D + E H T RERQ ELE EV L EE+++
Sbjct: 219 DETEDDEDTIEEDEKHFTKRERQEELEALQNEVDLPVEELLR 260
>At2g44410.1 68415.m05523 expressed protein
Length = 413
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 487 GMEECEICFSVLPTSIMTGLECGHRFCTQCW 579
G +C IC I+T CGH FC C+
Sbjct: 121 GFFDCNICLEKAEDPILTC--CGHLFCWGCF 149
>At2g25360.1 68415.m03035 zinc finger protein-related contains weak
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 373
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +1
Query: 442 PVIQRPKLPRRISTSGMEECEICFSVLPTSIMTG---LECGHRFCTQCWCEY 588
P++ KL +C++C ++ S CG++FC QC E+
Sbjct: 234 PLVDELKLKSLAKDKKWRQCKMCRHMIELSHACNHMTCRCGYQFCYQCEVEW 285
>At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 623
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCW 579
C IC + + T CGH FC +C+
Sbjct: 129 CSICIQLPERPVTT--PCGHNFCLKCF 153
>At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 622
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCW 579
C IC + + T CGH FC +C+
Sbjct: 129 CSICIQLPERPVTT--PCGHNFCLKCF 153
>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 491
Score = 27.5 bits (58), Expect = 7.4
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Frame = +1
Query: 367 LMERFYDGDQDQLFSEARVINPFRKPV---IQRPK--LPRRI-STSGMEE------CEIC 510
L+ER Y+ +D + S + I+PF P+ +Q + +P + T GM E C +C
Sbjct: 142 LLER-YEVARDTILSGLQ-IDPFSGPLRSNLQELEKVMPNSMRKTHGMAERSDDFDCTVC 199
Query: 511 FSVLPTSIMTGLECGHRFCTQC 576
+L T CGH FC C
Sbjct: 200 LKLLYEPATT--PCGHTFCRSC 219
>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 27.5 bits (58), Expect = 7.4
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Frame = +1
Query: 367 LMERFYDGDQDQLFSEARVINPFRKPV---IQRPK--LPRRI-STSGMEE------CEIC 510
L+ER Y+ +D + S + I+PF P+ +Q + +P + T GM E C +C
Sbjct: 142 LLER-YEVARDTILSGLQ-IDPFSGPLRSNLQELEKVMPNSMRKTHGMAERSDDFDCTVC 199
Query: 511 FSVLPTSIMTGLECGHRFCTQC 576
+L T CGH FC C
Sbjct: 200 LKLLYEPATT--PCGHTFCRSC 219
>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 27.5 bits (58), Expect = 7.4
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Frame = +1
Query: 367 LMERFYDGDQDQLFSEARVINPFRKPV---IQRPK--LPRRI-STSGMEE------CEIC 510
L+ER Y+ +D + S + I+PF P+ +Q + +P + T GM E C +C
Sbjct: 142 LLER-YEVARDTILSGLQ-IDPFSGPLRSNLQELEKVMPNSMRKTHGMAERSDDFDCTVC 199
Query: 511 FSVLPTSIMTGLECGHRFCTQC 576
+L T CGH FC C
Sbjct: 200 LKLLYEPATT--PCGHTFCRSC 219
>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 27.5 bits (58), Expect = 7.4
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Frame = +1
Query: 367 LMERFYDGDQDQLFSEARVINPFRKPV---IQRPK--LPRRI-STSGMEE------CEIC 510
L+ER Y+ +D + S + I+PF P+ +Q + +P + T GM E C +C
Sbjct: 142 LLER-YEVARDTILSGLQ-IDPFSGPLRSNLQELEKVMPNSMRKTHGMAERSDDFDCTVC 199
Query: 511 FSVLPTSIMTGLECGHRFCTQC 576
+L T CGH FC C
Sbjct: 200 LKLLYEPATT--PCGHTFCRSC 219
>At1g17145.1 68414.m02090 expressed protein
Length = 335
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 490 MEECEICFSVLPTSIMTGLECGHRFCTQCW 579
+EEC ICF P S+ C CT+C+
Sbjct: 60 LEECPICFLYYP-SLNRSRCCMKSICTECF 88
>At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger)
family protein
Length = 421
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCWCEYLT 594
C IC ++L + T EC H FC +C E +T
Sbjct: 16 CSICDNILRDAT-TISECLHTFCRKCIYEKIT 46
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 457 PKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQC 576
P P S S + C IC S P + G CGH+ C +C
Sbjct: 411 PVPPPTSSASDNQLCPICLSN-PKDMAFG--CGHQTCCEC 447
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 457 PKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQC 576
P P S S + C IC S P + G CGH+ C +C
Sbjct: 411 PVPPPTSSASDNQLCPICLSN-PKDMAFG--CGHQTCCEC 447
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 457 PKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQC 576
P P S S + C IC S P + G CGH+ C +C
Sbjct: 411 PVPPPTSSASDNQLCPICLSN-PKDMAFG--CGHQTCCEC 447
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 457 PKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQC 576
P P S S + C IC S P + G CGH+ C +C
Sbjct: 411 PVPPPTSSASDNQLCPICLSN-PKDMAFG--CGHQTCCEC 447
>At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 426
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCWCEY 588
C IC + T I+ L C H FC C E+
Sbjct: 365 CAICQEKMHTPIL--LRCKHMFCEDCVSEW 392
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 496 ECEICFSVLPTSIMTGLECGHRFCTQC 576
+C IC S+ +++ L C H FC C
Sbjct: 350 KCPICLSLYNSAV--SLSCNHVFCNAC 374
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 27.1 bits (57), Expect = 9.7
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Frame = +1
Query: 163 DVDFAMDVETHSTRERQTEL-EEYPYEVLSTEEIVQHMVDCI--KEVNTVVEIPATTTRI 333
+++ A VET S+ ERQ EL E + EV + ++ + I E ++++ A +TR
Sbjct: 586 EIEVAKVVETQSSLERQLELIETHQQEVDKALQSMEEEAERIYNDERKSLLDDEAASTRD 645
Query: 334 LLNHFKWDKEKLMERFYDGDQDQLFSEARVIN 429
+ +++ +L+ER + +Q+ S + +N
Sbjct: 646 AM----YEQSELVERELEHMTEQIRSIIQSVN 673
>At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 137
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 499 CEICFSVLPTSIMTGLECGHRFCTQCWCEYL 591
C IC + I+T CGH FC C ++L
Sbjct: 19 CNICLELAREPIVT--LCGHLFCWPCLYKWL 47
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,270,508
Number of Sequences: 28952
Number of extensions: 278303
Number of successful extensions: 1000
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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