Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b16r
(740 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006617-8|AAF39772.2| 309|Caenorhabditis elegans Hypothetical ... 33 0.16
Z81513-6|CAB04176.1| 341|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z81549-6|CAB04475.1| 523|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z82090-6|CAB51468.1| 278|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z81526-10|CAB51464.1| 278|Caenorhabditis elegans Hypothetical p... 28 8.0
Z81055-9|CAB02898.3| 562|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z70286-4|CAA94291.2| 533|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z68119-7|CAA92193.2| 360|Caenorhabditis elegans Hypothetical pr... 28 8.0
AJ582070-1|CAE46540.1| 533|Caenorhabditis elegans flavin monoox... 28 8.0
>AC006617-8|AAF39772.2| 309|Caenorhabditis elegans Hypothetical
protein C39B5.9 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 381 RYFSFVEHLHNFSHWHGVFFKYDKFIRIADNLVLTSGEFSCEPVQLEEFHPVVL 542
+Y + HL NF + + F I+I D+L+ S SCE + + E HP+ L
Sbjct: 209 KYIEHLFHLQNFYIYEMIDFSTQAAIKIRDDLMRRSTFESCE-IYIREAHPIEL 261
>Z81513-6|CAB04176.1| 341|Caenorhabditis elegans Hypothetical
protein F26D2.7 protein.
Length = 341
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 216 KRLIVKNKRFERSQVLAFVVEWIDENKELEWE--STFSTSRQHESFRHVTELFRHIKRYF 389
+ +I KN FE S V F++ +EN ++W+ S ++ F++ +F +K YF
Sbjct: 163 REVIRKNFDFEISSVARFIMMPYNENNTIQWKALSLLISAGILICFQYFIFVFFGLKIYF 222
Query: 390 SFVEHLHNFS 419
+ L +FS
Sbjct: 223 NMKLRLKSFS 232
>Z81549-6|CAB04475.1| 523|Caenorhabditis elegans Hypothetical
protein F55C9.7 protein.
Length = 523
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Frame = +3
Query: 18 LWILRMQN----SSVYLNL---IFWNNIRLCVIRRNIEFVREPFTLVVNENILEIHV 167
+W+ R+ N S +YL+L WNN +C RRN+ ++ T +++ N +HV
Sbjct: 377 VWLQRIVNQFSGSFLYLDLDVNSIWNNQIMCTNRRNL-YISTSCTELLSVNCTHLHV 432
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 28.3 bits (60), Expect = 6.0
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 255 QVLAFVVEWIDENKELEWESTFSTSRQHESFRHVTELFRHI--KRYFSFVEHLHNFSHWH 428
+ LAF + IDE EL+ + +S+S + V E R + + Y F+++ N S
Sbjct: 176 KTLAFALPVIDEILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFLKYCANTSISA 235
Query: 429 GVFFKYDKFIRIADNLVLT 485
F + I+ AD LV T
Sbjct: 236 ANFSGEETDIQHADILVST 254
>Z82090-6|CAB51468.1| 278|Caenorhabditis elegans Hypothetical
protein ZK337.5 protein.
Length = 278
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -1
Query: 488 AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 369
AG NK NE ++ ++ + +TE+++ ++ KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260
>Z81526-10|CAB51464.1| 278|Caenorhabditis elegans Hypothetical
protein ZK337.5 protein.
Length = 278
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -1
Query: 488 AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 369
AG NK NE ++ ++ + +TE+++ ++ KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260
>Z81055-9|CAB02898.3| 562|Caenorhabditis elegans Hypothetical
protein F01G10.10 protein.
Length = 562
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 78 IRLCVIRRNIEFVREPFTLVVNENILEIHVRNLE*CINNGAI 203
I L ++ + ++RE V+NE IL++ + N+ I NG +
Sbjct: 39 IYLRIMPNGLAYLREVGMKVINEQILKLQLPNIREPIENGEV 80
>Z70286-4|CAA94291.2| 533|Caenorhabditis elegans Hypothetical
protein K08C7.2 protein.
Length = 533
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 231 KNKRFERSQVLAFVVEWIDENKELEWESTFSTSRQHESFRHVTELFRHIKRYFSFVE 401
K + E S V+ V I+ +KE+ S F + +F H TE++R++ Y E
Sbjct: 47 KPQETELSSVMKTTV--INTSKEMTAYSDFPPESRMANFMHNTEMYRYLLNYSKHYE 101
>Z68119-7|CAA92193.2| 360|Caenorhabditis elegans Hypothetical
protein T18D3.3 protein.
Length = 360
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/46 (26%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = -1
Query: 725 VYFSKEEIKX-NHVHDVKVRQPRLNHSPFNVNIEVDSNVASDAVVK 591
V+ S E+I+ VHD+++ ++ +V++E+D+N S ++++
Sbjct: 278 VFSSLEDIEGVKKVHDLRIWSLTMDKIALSVHLEIDANSQSQSILR 323
>AJ582070-1|CAE46540.1| 533|Caenorhabditis elegans flavin
monooxygenase protein.
Length = 533
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 231 KNKRFERSQVLAFVVEWIDENKELEWESTFSTSRQHESFRHVTELFRHIKRYFSFVE 401
K + E S V+ V I+ +KE+ S F + +F H TE++R++ Y E
Sbjct: 47 KPQETELSSVMKTTV--INTSKEMTAYSDFPPESRMANFMHNTEMYRYLLNYSKHYE 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,657,907
Number of Sequences: 27780
Number of extensions: 378673
Number of successful extensions: 985
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -