Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b16f
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    29   0.58 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    28   1.3  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   1.8  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   5.4  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   7.1  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.1  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   7.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.4  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -3

Query: 642  EVVVFLVNAILSCGFRINEAILHLCYVNFLQHFHIHKHFRVY 517
            + V  +++A++  G   + ++L  C+VN   H   H+  R+Y
Sbjct: 922  QTVKTVISALIRLGKDFDSSLLVSCFVNAFPHIPQHRRLRLY 963


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -2

Query: 223 RYHSLCQFYNIHHQ--CLVGSHLG 158
           +Y++ C FYNI H   C  G  LG
Sbjct: 35  KYYNFCPFYNIQHNYTCQTGDPLG 58


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 136 QKKILSFFQDVSQLNTDDEYYKIGKDY-DIEMNMDNYTNKKAVEEFLKMYRTGFMP 300
           + K+     D + L  DD      KD+ ++ +N  +Y NK  ++ F  + +  F P
Sbjct: 617 EMKLSDKIDDANSLKDDDFIQGSKKDFFEMNLNHSSYQNKDELKPFQLLVKHAFKP 672


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 148 LSFF--QDVSQLNTDDEYYKIGKDYDIEMNMDN 240
           L+FF  Q+V Q+N +DEY +   + D E  +DN
Sbjct: 49  LNFFSTQNVMQMNFEDEYSEFSNE-DDEAEIDN 80


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +1

Query: 142 KILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVE 264
           K L   +  S       YYK+ K Y  + N D     K VE
Sbjct: 89  KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +1

Query: 127 VEKQKKILSFFQDVSQLNTDDEY---YKIGKDYDIEMNMDNYTNKKAVEEFLKMY 282
           +EK K I+ F+ D+    T +EY   +K          +D+  ++  +++ L++Y
Sbjct: 496 IEKIKNIVPFYVDIDDTKTTEEYIINFKKNSWLFFRKKIDSEMSEVLLQQRLRVY 550


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 430 NQGQFL-YAFYIAVIQRSDCHG 492
           N G FL YAF+  VI+  D HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 505 APYEVYPKMFMNMEVLQKIYVTKMQDGLINPEAAAKYGIHKEN 633
           A  + Y K+   ME +Q      +Q GL+N  + +   +H+ N
Sbjct: 615 AQIQAYNKLQSQMEHVQNSNEQHLQPGLLNKVSKSFDSVHRRN 657


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,310
Number of Sequences: 5004
Number of extensions: 51583
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)