Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b16f
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein... 33 0.23
U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein... 33 0.23
Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical pr... 30 1.6
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 30 1.6
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 30 1.6
DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein. 30 1.6
AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transpor... 30 1.6
Z67995-2|CAA91944.2| 458|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF039050-3|AAC47936.2| 498|Caenorhabditis elegans Cytochrome p4... 28 6.6
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 27 8.7
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 27 8.7
>U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein
1.0, isoform b protein.
Length = 154
Score = 32.7 bits (71), Expect = 0.23
Identities = 25/84 (29%), Positives = 42/84 (50%)
Frame = +1
Query: 133 KQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLE 312
K KK+ S F + +T D YY + + + + + +TN V+E +K Y P + +
Sbjct: 51 KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99
Query: 313 FSVFYDKMRDEAIALFHLFYYAKD 384
+S +EAIA FH +Y K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118
>U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein
1.0, isoform a protein.
Length = 155
Score = 32.7 bits (71), Expect = 0.23
Identities = 25/84 (29%), Positives = 42/84 (50%)
Frame = +1
Query: 133 KQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLE 312
K KK+ S F + +T D YY + + + + + +TN V+E +K Y P + +
Sbjct: 51 KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99
Query: 313 FSVFYDKMRDEAIALFHLFYYAKD 384
+S +EAIA FH +Y K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118
>Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical
protein T03F7.1 protein.
Length = 610
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 591 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 442
N I V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 301 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 435
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 301 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 435
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536
>DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein.
Length = 610
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 591 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 442
N I V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transporter
protein protein.
Length = 610
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 591 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 442
N I V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>Z67995-2|CAA91944.2| 458|Caenorhabditis elegans Hypothetical
protein M153.2 protein.
Length = 458
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 621 NAILSCGFRINEAILHLCYVNFLQHFHIHK 532
+AI+ CG ++ + LCY+NF Q + K
Sbjct: 295 DAIILCGTIVHLVVYALCYINFPQDSSLKK 324
>AF039050-3|AAC47936.2| 498|Caenorhabditis elegans Cytochrome p450
family protein 34A6 protein.
Length = 498
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 151 SFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEF 270
+F +S ++TDDE +K K+++ E M+N +K + F
Sbjct: 397 AFATQLSAMHTDDETFKNHKEFNPERFMENNNLEKKLIPF 436
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 100 KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 195
++K+VDA KQK ++ Q V LN +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 100 KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 195
++K+VDA KQK ++ Q V LN +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 100 KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 195
++K+VDA KQK ++ Q V LN +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,165,708
Number of Sequences: 27780
Number of extensions: 293054
Number of successful extensions: 828
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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