Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b15r
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 30 0.28
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 28 1.5
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 27 2.0
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 27 2.6
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 27 2.6
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 26 4.6
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 26 4.6
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 26 6.1
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.1
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 25 8.1
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 30.3 bits (65), Expect = 0.28
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 222 VFDFDRFCLDSEGYVVEAQSARSVRAGHETERVQSGLQFGGGANKHVH 365
+++FDRF D ++ + SV G ET + + +GG ++ +H
Sbjct: 507 LYEFDRFESDKNLWIWNDMNEPSVFRGPETSMHRDAIHYGGWEHRDIH 554
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -1
Query: 608 FTKYARHWTGLCKCSCAFENVFMAELKSNEVLGLHSW 498
F + R W + F ++FM + + + V G++SW
Sbjct: 397 FLLFVRGWLSPLGINRIFGSIFMGKTRQDRVYGMYSW 433
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = -2
Query: 256 SLSKQNRSKSKTY---RSLTPLTQLGKKIIFKKTNKSSLKGR 140
S S ++ SKS++Y RS+TP+ + K +K + S +GR
Sbjct: 645 SRSTRSYSKSRSYSRSRSVTPINNINHKKYIRKDRELSPRGR 686
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 602 KYARHWTGLCKCSCAFENVFMAELKSNEVLGLHSW 498
KY ++W CK + F M +LKS++ L + W
Sbjct: 466 KYRKYWPDFCKAAGVF---CMGDLKSSDSLKVCDW 497
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 135 IVLPLREDLFVFLNIIFLPSWVSGVNDR*VFDFDRFCLDSEGY-VVEAQSARSVRAGHET 311
I+LP R F F+N++ S + V +R FD + F ++ E + + R + +G+
Sbjct: 262 ILLPTRNSAFEFINLLISYSGTNQVENRKRFD-NEFSIEKEVISEKKPEDFRYLFSGNTD 320
Query: 312 ERVQSGLQF 338
+ + G++F
Sbjct: 321 DMFRLGVKF 329
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 93 RYTNVCCRKYNNKTIVLPLREDLFVFLNII 182
R N + N+K I PLRE++F N++
Sbjct: 376 RVLNTVTKSNNSKPIQRPLRENIFTLPNLL 405
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 596 ARHWTGLCKCSCAFENVFMAELKSN 522
A+ + +CK + F+NV+ ELK N
Sbjct: 67 AQDFVNVCKDASVFQNVYYYELKKN 91
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 607 SRSTHATGPAFANAVAPSRTCL 542
S ST P F N AP+ TCL
Sbjct: 45 SNSTTVPPPPFVNTTAPNGTCL 66
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 8.1
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = -1
Query: 587 WTGLCKCSCAFENVFMAELKSNEVLGLHSWLFFAKRELDHKANYLGYIDKLDLSGKGLIL 408
W GL K + VFM K N+ ++ L F +++D A L + GKG L
Sbjct: 226 WKGLSKLEIDVQRVFMIRYKFNDAFCGYAILEF--KDVDESAKAL--MKARTYPGKGFTL 281
Query: 407 KQHSV 393
V
Sbjct: 282 ASRKV 286
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 587 WTGLCKCSCAFENVFM-AELKSNEVLGLHSWL 495
WTGLC S F N F+ + + S E + + W+
Sbjct: 329 WTGLCYES-GFANTFLISGIHSKEAISILKWI 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,625
Number of Sequences: 5004
Number of extensions: 59285
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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