Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b15f
(633 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31891| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_31211| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_9542| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_23459| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0.17) 30 1.4
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0) 29 3.1
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3) 28 5.5
SB_9555| Best HMM Match : Pec_lyase_N (HMM E-Value=4.6) 28 7.2
>SB_31891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 59.7 bits (138), Expect = 2e-09
Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Frame = +1
Query: 298 DLLRVSEEMFNADINNAFNYIQ--VNLQGKTTPMSRNDEAQSNLLN-VPENVWSGPTIRP 468
+L V ++M+ AD N + ++ QGKT SR+D+A L V PT
Sbjct: 2 ELSHVCDQMWKADSNRLVPEVDYAIDPQGKTRFHSRSDQASDPLFTWVNPEALRKPTYDA 61
Query: 469 FVALFDNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNKGI 621
FV L DNY +PE V E E +I+ I TGP+ FL KG+
Sbjct: 62 FVKLLDNYASETGKPEVVNQEEINENRVFIDRIYDTGPMEIAHKFLAGKGL 112
>SB_31211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 46.0 bits (104), Expect = 3e-05
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Frame = +1
Query: 316 EEMFNADINNAFNYIQVN--LQGKTTPMSRNDEAQSNLLN-VPENVWSGPTIRPFVALFD 486
+ +F ADIN ++ + N LQ T P R+D A L V E T ALFD
Sbjct: 13 QRLFQADINRLYHGVDYNISLQNHTRPSMRDDVAPLPLFTWVNETRLKHTTFSSMEALFD 72
Query: 487 NYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNK 615
NY E + E E+ +I ++AT ++ +LV++
Sbjct: 73 NYFLYTGNKEHESKQEREEKKGFIEAVMATDVMKLTHNYLVHE 115
>SB_9542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 31.1 bits (67), Expect = 0.78
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 430 VPENVW--SGPTIRPFVALFDNYHKNVIRPEFVTPNEETEQTTYIN 561
V N W S T F+ L DNY ++ PEF T + T+Q+ +N
Sbjct: 28 VTVNTWDLSVKTSLGFIQLIDNYFQDPKGPEFPTKLKNTQQSVRVN 73
>SB_23459| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0.17)
Length = 797
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +1
Query: 280 DSTTDDDLLRVSEEMFNADINNAFNYIQVNLQGKTTPMSRNDEAQSNLLNVPENVWSGPT 459
+S DD+L R + + F Y+QVNL R D + +N+P S
Sbjct: 580 ESLRDDNLARSTAAAYQN--GTTFFYVQVNLHKTFVISKRTDSIINESVNLPRRSMSVDR 637
Query: 460 IR-PFVALFD 486
+R PF FD
Sbjct: 638 LRGPFRCKFD 647
>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 2322
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +1
Query: 100 IAQAAGQIFNNILPNLI--SNHVTGQQGNTAQNTFQQIGT-VVGGVVDYAKKKSYEDLLR 270
I A+G+ F+ L + +N + G TAQ F ++GT +VG + + +ED +
Sbjct: 1053 IKAASGKFFSRALDDAADSANRIEG----TAQKEFAEVGTDIVGVQKQMVELQKFEDDML 1108
Query: 271 QAQDSTTDDDLLRVSEE 321
+ +DS DDL + +E
Sbjct: 1109 KEEDSF--DDLQKKMDE 1123
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 28.3 bits (60), Expect = 5.5
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 76 LGVCHADDIAQAAGQIFNNILPNLISNHVTGQQGNTAQNTFQQIG-TVVGGVVDYAKKKS 252
LGV D++ G+ N+ +L H Q G T+ + + +G + G VV+Y+ +S
Sbjct: 129 LGVLTYDELDNGQGRARLNLFRHL---HEI-QSGRTSSISHEILGFSCTGEVVNYSDGRS 184
Query: 253 YEDLLRQAQDSTTDDDL 303
ED+ Q+ T DL
Sbjct: 185 AEDVCEQSSKLITFIDL 201
>SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3)
Length = 194
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 475 ALFDNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNK 615
ALFDNY E + E E+ +I ++AT ++ +LV++
Sbjct: 12 ALFDNYFLYTGNKEHESKQEREEKKGFIEAVMATDVMKLTHNYLVHE 58
>SB_9555| Best HMM Match : Pec_lyase_N (HMM E-Value=4.6)
Length = 206
Score = 27.9 bits (59), Expect = 7.2
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Frame = +1
Query: 142 NLISNHVTGQQGNTAQNTFQQIGTVVGGVVDYAKKKSYE-DLLRQAQDSTTDDDLLRVSE 318
+L+++H Q + T + VV G A K SY L +S DD+L R +
Sbjct: 69 SLLTDHGGALQALIFEITLATVDQVVVG--SDATKLSYGIKNLELEYESLRDDNLARSAA 126
Query: 319 EMFNADINNAFNYIQVNLQGKTTPMSR-NDEAQSNLLNVPENVWSG 453
+ F Y QVNL KT+ +S+ D + +N+P SG
Sbjct: 127 AAYQN--GTTFFYEQVNLH-KTSVISKGTDSIINESVNLPRRSMSG 169
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,604,179
Number of Sequences: 59808
Number of extensions: 381295
Number of successful extensions: 1069
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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