Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b15f
(633 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr... 33 0.17
U58758-12|AAB93432.1| 392|Caenorhabditis elegans Hypothetical p... 29 2.8
AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical ... 29 2.8
Z72509-3|CAA96647.1| 129|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z70206-2|CAA94126.2| 771|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z72503-7|CAA96597.1| 424|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical pr... 27 8.4
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein. 27 8.4
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 27 8.4
>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
protein F46H5.4 protein.
Length = 2018
Score = 33.1 bits (72), Expect = 0.17
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +1
Query: 253 YEDLLRQAQDSTTDDDLLRVSEEM--FNADIN-NAFNY-IQVNLQGKTTPMSRNDEAQSN 420
+ +RQ D T+D+D+ R+ EM N ++ FN+ +++ L G +
Sbjct: 505 FSSFIRQEGDKTSDEDIYRICSEMRRTNGKVHKKMFNFELELTLAGSNKSKEYQSHGSNL 564
Query: 421 LLNVPENVWSGPTIRPFVALFDNYHKNVI 507
LN + I + A + +KNVI
Sbjct: 565 TLNSERVIHEAMEIPIYQASLNKSYKNVI 593
>U58758-12|AAB93432.1| 392|Caenorhabditis elegans Hypothetical
protein ZK1127.10 protein.
Length = 392
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 472 VALFDNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLIT-FLVNKGITQLN 633
+ + N H +V+ +T N+E +Q + LA G + S FLVN+G+ L+
Sbjct: 201 ITKYINGHSDVVMGAVITDNDEFQQHLFFMQ-LAVGAVPSPFDCFLVNRGLKTLH 254
>AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical
protein Y42H9AR.1 protein.
Length = 506
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 487 NYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNKGITQL 630
+Y + + P F + T T+Y+N I P+ + L + GITQL
Sbjct: 426 SYVPSAVPPMFSATSAPTPPTSYVNPIPPPAPLNFPMPSLSSIGITQL 473
>Z72509-3|CAA96647.1| 129|Caenorhabditis elegans Hypothetical
protein F32G8.3 protein.
Length = 129
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 539 VSSFGVTNSGLITFL**LSNS-ATKGLIVGPLHTFSGTFNKF 417
+SS+ NSG+ + L S ++G++ GPL F G N F
Sbjct: 86 ISSYNCRNSGMSANVNALQQSHQSQGMMQGPLAGFGGLLNNF 127
>Z70206-2|CAA94126.2| 771|Caenorhabditis elegans Hypothetical
protein C49F8.2 protein.
Length = 771
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 454 PTIRPFVALFDNYHKNVIRPEFVTPNEETEQTTYINTILATGP 582
PT VALFDN H+ PE+ N +++ LA P
Sbjct: 327 PTRSKSVALFDNKHQMSSIPEYSMLNTNLANLEHLDLELANSP 369
>Z72503-7|CAA96597.1| 424|Caenorhabditis elegans Hypothetical
protein C26C6.4a protein.
Length = 424
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 307 RVSEEMFNADINNAFNYIQVNLQGKTTP 390
RVS+E+ DI+N +N++Q + Q K P
Sbjct: 58 RVSKELSFEDIHNEYNFMQFSEQLKAMP 85
>Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical
protein T24A11.1a protein.
Length = 938
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Frame = +1
Query: 406 EAQSNLLNVPENVWS--GPTIRPFV-ALFDNYHKNVIRPEFVTPNEE---TEQTTYINTI 567
EA ++W GP +V FD ++ ++P+ +P EE + TT +NT
Sbjct: 573 EAMEKCKGTLVDIWRFIGPHNEEYVNQSFDEHYTGAVKPQIFSPKEERPLSGCTTPMNTS 632
Query: 568 LATGPIRSLITFLVN 612
+T ++S + +N
Sbjct: 633 TSTNLVKSKSSESIN 647
>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
Length = 1751
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 250 SYEDLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYIQ 363
+Y+D+LR ++ DD+ L + A+++NA +Q
Sbjct: 1568 NYDDILRSIENEIRDDNELTAKNQEILAELSNAEQTLQ 1605
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 250 SYEDLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYIQ 363
+Y+D+LR ++ DD+ L + A+++NA +Q
Sbjct: 1568 NYDDILRSIENEIRDDNELTAKNQEILAELSNAEQTLQ 1605
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,857,779
Number of Sequences: 27780
Number of extensions: 286764
Number of successful extensions: 856
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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