Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b15f
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.3  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   7.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   7.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
 Frame = -3

Query: 214 LCLFAGKCFELCSLAD-QSHDC 152
           LC +   CF LC   D  + DC
Sbjct: 736 LCRYEAHCFALCHCCDFDACDC 757


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 79  GVCHADD 99
           GVCHADD
Sbjct: 461 GVCHADD 467


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = +1

Query: 478 LFDNYHKNVIRPEFVTP 528
           +FD+  +  +RP +++P
Sbjct: 608 IFDSASRTAVRPRYISP 624


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 235 YAKKKSY-EDLLRQAQDSTTDDDLLRVSEEMFNADINNA 348
           +A  + Y +D    A    T +DLL    +M+   +NNA
Sbjct: 436 FANNQPYTKDSYTVAGMGETIEDLLHFCRQMYAMKVNNA 474


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = +1

Query: 478 LFDNYHKNVIRPEFVTP 528
           +FD+  +  +RP +++P
Sbjct: 698 IFDSASRTAVRPRYISP 714


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 79  GVCHADD 99
           GVCHADD
Sbjct: 461 GVCHADD 467


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 496 KNVIRPEFVTPNEETEQTTYINTILATG 579
           +N++    V    +  QTTY+   +ATG
Sbjct: 192 RNMVPENLVQACFQQAQTTYVTKEVATG 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,268
Number of Sequences: 438
Number of extensions: 3425
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)