Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b14r
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical ...    33   0.15 
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    32   0.46 
Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81549-6|CAB04475.1|  523|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z75546-3|CAA99891.1|  581|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z82090-6|CAB51468.1|  278|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81526-10|CAB51464.1|  278|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z70286-4|CAA94291.2|  533|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AJ582070-1|CAE46540.1|  533|Caenorhabditis elegans flavin monoox...    28   7.5  
Z66500-1|CAA91303.1|  325|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormon...    27   9.9  
U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormon...    27   9.9  
U40416-1|AAA81410.2|  822|Caenorhabditis elegans Protein kinase ...    27   9.9  
AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear recep...    27   9.9  
AF403714-1|AAK97497.1|  822|Caenorhabditis elegans serine/threon...    27   9.9  

>AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical
           protein C39B5.9 protein.
          Length = 309

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +2

Query: 383 RYFSFVEHLHNFSHWHGVFFKYDKFIRIADNLVLTSGEFSCEPVQLEEFHPVVL 544
           +Y   + HL NF  +  + F     I+I D+L+  S   SCE + + E HP+ L
Sbjct: 209 KYIEHLFHLQNFYIYEMIDFSTQAAIKIRDDLMRRSTFESCE-IYIREAHPIEL 261


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 699 TTTSMTLRCASHD*TTAPSTLTLRLILMSPVTLLSKSSWLPNTMTTE 559
           TTT+ T    + + TT P+T T      +P T  ++++  P T TTE
Sbjct: 103 TTTTETTTTPTTETTTTPTTTTPTTTTTTPTTTTTETTTTPTTTTTE 149


>Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical
           protein F26D2.7 protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +2

Query: 218 KRLIVKNKRFERSQVLAFVVEWIDENKELEWE--STFSTSRQHESFRHVTELFRHIKRYF 391
           + +I KN  FE S V  F++   +EN  ++W+  S   ++     F++   +F  +K YF
Sbjct: 163 REVIRKNFDFEISSVARFIMMPYNENNTIQWKALSLLISAGILICFQYFIFVFFGLKIYF 222

Query: 392 SFVEHLHNFS 421
           +    L +FS
Sbjct: 223 NMKLRLKSFS 232


>Z81549-6|CAB04475.1|  523|Caenorhabditis elegans Hypothetical
           protein F55C9.7 protein.
          Length = 523

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
 Frame = +2

Query: 20  LWILRMQN----SSVYLNL---IFWNNIRLCVIRRNIEFVREPFTLVVNENILEIHV 169
           +W+ R+ N    S +YL+L     WNN  +C  RRN+ ++    T +++ N   +HV
Sbjct: 377 VWLQRIVNQFSGSFLYLDLDVNSIWNNQIMCTNRRNL-YISTSCTELLSVNCTHLHV 432


>Z75546-3|CAA99891.1|  581|Caenorhabditis elegans Hypothetical
           protein R05D11.4 protein.
          Length = 581

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +2

Query: 257 QVLAFVVEWIDENKELEWESTFSTSRQHESFRHVTELFRHI--KRYFSFVEHLHNFSHWH 430
           + LAF +  IDE  EL+  + +S+S   +    V E  R +  + Y  F+++  N S   
Sbjct: 176 KTLAFALPVIDEILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFLKYCANTSISA 235

Query: 431 GVFFKYDKFIRIADNLVLT 487
             F   +  I+ AD LV T
Sbjct: 236 ANFSGEETDIQHADILVST 254


>Z82090-6|CAB51468.1|  278|Caenorhabditis elegans Hypothetical
           protein ZK337.5 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 490 AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 371
           AG NK     NE  ++ ++ + +TE+++ ++  KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260


>Z81526-10|CAB51464.1|  278|Caenorhabditis elegans Hypothetical
           protein ZK337.5 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 490 AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 371
           AG NK     NE  ++ ++ + +TE+++ ++  KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260


>Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical
           protein F01G10.10 protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 80  IRLCVIRRNIEFVREPFTLVVNENILEIHVRNLE*CINNGAI 205
           I L ++   + ++RE    V+NE IL++ + N+   I NG +
Sbjct: 39  IYLRIMPNGLAYLREVGMKVINEQILKLQLPNIREPIENGEV 80


>Z70286-4|CAA94291.2|  533|Caenorhabditis elegans Hypothetical
           protein K08C7.2 protein.
          Length = 533

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 233 KNKRFERSQVLAFVVEWIDENKELEWESTFSTSRQHESFRHVTELFRHIKRYFSFVE 403
           K +  E S V+   V  I+ +KE+   S F    +  +F H TE++R++  Y    E
Sbjct: 47  KPQETELSSVMKTTV--INTSKEMTAYSDFPPESRMANFMHNTEMYRYLLNYSKHYE 101


>AJ582070-1|CAE46540.1|  533|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 533

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 233 KNKRFERSQVLAFVVEWIDENKELEWESTFSTSRQHESFRHVTELFRHIKRYFSFVE 403
           K +  E S V+   V  I+ +KE+   S F    +  +F H TE++R++  Y    E
Sbjct: 47  KPQETELSSVMKTTV--INTSKEMTAYSDFPPESRMANFMHNTEMYRYLLNYSKHYE 101


>Z66500-1|CAA91303.1|  325|Caenorhabditis elegans Hypothetical
           protein T05C12.1 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 260 VLAFVVEWIDENKELEWE 313
           +LA+ V+++D+N E EW+
Sbjct: 304 ILAYCVKFVDDNAEFEWD 321


>U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform b protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +2

Query: 458 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 592
           IR+++ L LT G   C    LEE HP     +   + YS  ++FG   D
Sbjct: 364 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 412


>U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform a protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +2

Query: 458 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 592
           IR+++ L LT G   C    LEE HP     +   + YS  ++FG   D
Sbjct: 380 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 428


>U40416-1|AAA81410.2|  822|Caenorhabditis elegans Protein kinase
           protein 29 protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
 Frame = -1

Query: 433 SVPMTEIMKMLDEG----KVPFDMSEEFCYMP-----KRLMLPRGTEGG 314
           ++P TE++  L       K+PF  S E  Y P     +RL LP G E G
Sbjct: 729 TLPFTEVIDELKASLNILKIPFSESHEMVYEPQVTEMRRLSLPSGVEIG 777


>AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear receptor
           NHR-105 protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +2

Query: 458 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 592
           IR+++ L LT G   C    LEE HP     +   + YS  ++FG   D
Sbjct: 380 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 428


>AF403714-1|AAK97497.1|  822|Caenorhabditis elegans serine/threonine
           kinase KIN-29 protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
 Frame = -1

Query: 433 SVPMTEIMKMLDEG----KVPFDMSEEFCYMP-----KRLMLPRGTEGG 314
           ++P TE++  L       K+PF  S E  Y P     +RL LP G E G
Sbjct: 729 TLPFTEVIDELKASLNILKIPFSESHEMVYEPQVTEMRRLSLPSGVEIG 777


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,760,740
Number of Sequences: 27780
Number of extensions: 381101
Number of successful extensions: 1030
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)