Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b13r
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024860-3|AAK29985.1|  345|Caenorhabditis elegans Hypothetical ...    32   0.49 
U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical pr...    29   4.6  

>AC024860-3|AAK29985.1|  345|Caenorhabditis elegans Hypothetical
           protein Y71H2AR.2 protein.
          Length = 345

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 505 NNFSCTELTLPFILFKNNSFGCRKLSPEIFISLFNL 612
           +NF C  LT+ F ++ N SF C      IF  L++L
Sbjct: 305 SNFCCISLTVLFKMYHNQSFKCFSGEHPIFFKLYHL 340


>U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical
           protein T05E8.1 protein.
          Length = 893

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 84  NCVYNICVYFRI*PEFRSHPVCICVEPGHF 173
           NC  ++ +  +I P+F S PVCI +  G F
Sbjct: 411 NCFCSMSLVNKIDPQFASDPVCIMMSIGSF 440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,204,559
Number of Sequences: 27780
Number of extensions: 267166
Number of successful extensions: 495
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)