Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b13r
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14620.1 68417.m02250 expressed protein contains Pfam profile...    29   4.3  
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /...    27   9.9  
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /...    27   9.9  

>At4g14620.1 68417.m02250 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 341

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 397 NFQLLISCYSIITKKIANN*TKLLKNDYSIRNIDNYNNFSCTELT 531
           NF+ LI C S + K +    TK+++ + S++  D        EL+
Sbjct: 108 NFKSLIQCGSFVEKSLLVEATKIIEKNKSVKRKDELRKIVVDELS 152


>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 334

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 412 LEAGSFSPDLCFLLNKILYNIVGIVRTRIFEEENNM 305
           +E  SFSPDL   +  + +N+      ++FE   N+
Sbjct: 90  VERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNV 125


>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 342

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 412 LEAGSFSPDLCFLLNKILYNIVGIVRTRIFEEENNM 305
           +E  SFSPDL   +  + +N+      ++FE   N+
Sbjct: 90  VERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNV 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,746,900
Number of Sequences: 28952
Number of extensions: 222013
Number of successful extensions: 390
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)