Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b13f
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   7.1  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    25   7.1  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   9.3  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 615 YRVFYLIKNTNQEKNFQLLISCYSI 541
           YR  +L++N N E N+ L   C S+
Sbjct: 3   YRQLFLLQNVNLESNYLLKRVCLSL 27


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 435 PFILFKNNSFGCRKLSPEIFISLFNLNHNFSKRK 334
           P I + NNS  C KL+ E+  ++ + +  F+ RK
Sbjct: 173 PVIRYDNNSLLCLKLAEEVSYTIQHESQLFNFRK 206


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 489 SIRNIDNYNNFSCTELTLPFILFK 418
           S+++ + Y+ F C  + +P  LFK
Sbjct: 14  SLKSTEEYDQFFCPSIDIPKFLFK 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,184
Number of Sequences: 5004
Number of extensions: 47072
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)