Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b13f
(646 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29) 32 0.46
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_54569| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0018) 29 2.4
SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12) 29 2.4
SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12) 29 2.4
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_59410| Best HMM Match : Rsd_AlgQ (HMM E-Value=6.5) 27 9.9
SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) 27 9.9
SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) 27 9.9
SB_47439| Best HMM Match : E6 (HMM E-Value=3.2) 27 9.9
SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) 27 9.9
SB_27702| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_26781| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_10674| Best HMM Match : E6 (HMM E-Value=3.2) 27 9.9
SB_55070| Best HMM Match : OAR (HMM E-Value=0.92) 27 9.9
>SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)
Length = 1123
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = -2
Query: 588 TNQEKNFQLLISCYSIITKKIANN*TKLLKNDYSIRNIDNYNNFSCTELTLPFILFKNNS 409
T+++ +F+++ + ++ K+ NN T++ KN + NI S TE+T IL NN+
Sbjct: 815 TSEDMDFEMMSTIKNLT--KMTNNTTEMTKNTTEMTNITTEMPNSTTEMTNNTILMTNNN 872
>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -2
Query: 585 NQEKNFQLLISCYSIITKKIANN*TKLLKNDYSIRNIDNYNNFS 454
N E+N +++ IIT+ I +N T+ + Y+++ ID+ N FS
Sbjct: 847 NTEQN-GIILGYKIIITETIQSNKTRSFSSFYTVQQIDHLNKFS 889
>SB_54569| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0018)
Length = 292
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Frame = -2
Query: 576 KNFQLLISCYSIITKK---IANN*TKLLKNDYSIRNID--NYNNF 457
KNF LL +I K IA TKL NDYS++NI+ NYN F
Sbjct: 99 KNFDLLEDILYLIDSKPQIIAVTETKL--NDYSVKNINFKNYNFF 141
>SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
Length = 648
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Frame = -2
Query: 576 KNFQLLISCYSIITKK---IANN*TKLLKNDYSIRNID--NYNNF 457
KNF LL +I K IA TKL NDYS++NI+ NYN F
Sbjct: 99 KNFDLLEDILYLIDSKPQIIAVTETKL--NDYSVKNINFKNYNFF 141
>SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
Length = 623
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Frame = -2
Query: 576 KNFQLLISCYSIITKK---IANN*TKLLKNDYSIRNID--NYNNF 457
KNF LL +I K IA TKL NDYS++NI+ NYN F
Sbjct: 301 KNFDLLEDILYLIDSKPQIIAVTETKL--NDYSVKNINFKNYNFF 343
>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1483
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 618 YYRVFYLIKNTNQEKNFQLLISCYSIITKKI 526
+Y VFY +K K ++ SC + I +K+
Sbjct: 759 FYEVFYFLKGVRYPKKCAIIPSCVNYIQRKL 789
>SB_59410| Best HMM Match : Rsd_AlgQ (HMM E-Value=6.5)
Length = 180
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = +1
Query: 37 VVKSRFY----IHNITFFLDIKTVGIIYAISI 120
V+K FY IH++TF L+ K + ++YA ++
Sbjct: 117 VLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 148
>SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
Length = 929
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = +1
Query: 37 VVKSRFY----IHNITFFLDIKTVGIIYAISI 120
V+K FY IH++TF L+ K + ++YA ++
Sbjct: 866 VLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 897
>SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
Length = 838
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = +1
Query: 37 VVKSRFY----IHNITFFLDIKTVGIIYAISI 120
V+K FY IH++TF L+ K + ++YA ++
Sbjct: 775 VLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 806
>SB_47439| Best HMM Match : E6 (HMM E-Value=3.2)
Length = 436
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = +1
Query: 37 VVKSRFY----IHNITFFLDIKTVGIIYAISI 120
V+K FY IH++TF L+ K + ++YA ++
Sbjct: 373 VLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 404
>SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
Length = 929
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = +1
Query: 37 VVKSRFY----IHNITFFLDIKTVGIIYAISI 120
V+K FY IH++TF L+ K + ++YA ++
Sbjct: 866 VLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 897
>SB_27702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = +1
Query: 37 VVKSRFY----IHNITFFLDIKTVGIIYAISI 120
V+K FY IH++TF L+ K + ++YA ++
Sbjct: 35 VLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 66
>SB_26781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = +1
Query: 37 VVKSRFY----IHNITFFLDIKTVGIIYAISI 120
V+K FY IH++TF L+ K + ++YA ++
Sbjct: 644 VLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 675
>SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1452
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = +1
Query: 37 VVKSRFY----IHNITFFLDIKTVGIIYAISI 120
V+K FY IH++TF L+ K + ++YA ++
Sbjct: 1418 VLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 1449
>SB_10674| Best HMM Match : E6 (HMM E-Value=3.2)
Length = 436
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = +1
Query: 37 VVKSRFY----IHNITFFLDIKTVGIIYAISI 120
V+K FY IH++TF L+ K + ++YA ++
Sbjct: 373 VLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 404
>SB_55070| Best HMM Match : OAR (HMM E-Value=0.92)
Length = 396
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = +1
Query: 37 VVKSRFY----IHNITFFLDIKTVGIIYAISI 120
V+K FY IH++TF L+ K + ++YA ++
Sbjct: 333 VLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 364
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,312,385
Number of Sequences: 59808
Number of extensions: 289777
Number of successful extensions: 508
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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