Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b13f
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024860-3|AAK29985.1|  345|Caenorhabditis elegans Hypothetical ...    32   0.40 
U43282-1|AAA83613.2|  547|Caenorhabditis elegans Hypothetical pr...    30   1.2  

>AC024860-3|AAK29985.1|  345|Caenorhabditis elegans Hypothetical
           protein Y71H2AR.2 protein.
          Length = 345

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 465 NNFSCTELTLPFILFKNNSFGCRKLSPEIFISLFNL 358
           +NF C  LT+ F ++ N SF C      IF  L++L
Sbjct: 305 SNFCCISLTVLFKMYHNQSFKCFSGEHPIFFKLYHL 340


>U43282-1|AAA83613.2|  547|Caenorhabditis elegans Hypothetical
           protein T22E5.3 protein.
          Length = 547

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 316 CFHSKTITSCINLMNIKFSIQMTEVKMAHRNVLSLFKQKYFIICALDTK 170
           C HS+    C+ + ++KF I    VK   ++V ++      I C LD K
Sbjct: 414 CIHSEVSFFCLGMCDVKFDIDPQRVKSCRKHVTNI------IACKLDEK 456


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,050,361
Number of Sequences: 27780
Number of extensions: 254958
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)