Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b12f
(607 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43840| Best HMM Match : NDK (HMM E-Value=0) 213 9e-56
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 4e-13
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1) 30 1.3
SB_43132| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_43840| Best HMM Match : NDK (HMM E-Value=0)
Length = 786
Score = 213 bits (520), Expect = 9e-56
Identities = 97/148 (65%), Positives = 112/148 (75%)
Frame = +3
Query: 84 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 263
ERTF+M+KPD V RGL+G II RFEKKGFKLV +KFV SE+ ++HY LA F+ GL
Sbjct: 639 ERTFLMIKPDAVSRGLIGEIISRFEKKGFKLVAMKFVKKSEDHFRKHYESLAKLKFYDGL 698
Query: 264 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 443
KYMS PV MVWEGL VVKT R MLG T+PA S PGTIRGD I +GRNIIHGSD+VE
Sbjct: 699 CKYMSQTPVCAMVWEGLGVVKTARVMLGETDPAKSLPGTIRGDFSIHIGRNIIHGSDAVE 758
Query: 444 SAKKEIGLWFTDKEVVGWTPANENWVYE 527
+AK+EI LWF D E+V WTP N W+YE
Sbjct: 759 TAKEEIALWFKDDELVDWTPCNNPWMYE 786
Score = 128 bits (310), Expect = 3e-30
Identities = 68/109 (62%), Positives = 78/109 (71%)
Frame = +3
Query: 84 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 263
ERTFIMVKPDGVQRGLVG II+RFE+KGFKLV LK V SEE L++HY+DLA PF+PGL
Sbjct: 127 ERTFIMVKPDGVQRGLVGEIIKRFEQKGFKLVALKMVQESEEHLKKHYADLAHLPFYPGL 186
Query: 264 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVG 410
VK+MSSGPVV M ADS+PGTIRGD C+ +G
Sbjct: 187 VKFMSSGPVVAM--------------------ADSKPGTIRGDFCVHIG 215
>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 71.7 bits (168), Expect = 4e-13
Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 3/139 (2%)
Frame = +3
Query: 84 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 263
+ T ++KP+ V+ I +R ++ GFK+ K V S+EL Q Y + + FF GL
Sbjct: 673 QSTVAVIKPE-VEPDQRELIKQRIKEAGFKIQLQKEVTLSKELASQFYHEHEGKDFFEGL 731
Query: 264 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQ---PGTIRGDLCIQVGRNIIHGSD 434
YMSSGP + MV + V R ++G +P ++ P +IR L V +N++HG
Sbjct: 732 TDYMSSGPTMFMVLSKEDAVSGWRSLMGPVDPEQAKEMAPESIRAALGKDVMKNVVHGPS 791
Query: 435 SVESAKKEIGLWFTDKEVV 491
E A K I +F + +++
Sbjct: 792 DPEKAGKVIKEFFPEAKIL 810
Score = 65.7 bits (153), Expect = 3e-11
Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Frame = +3
Query: 78 QRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFP 257
Q +RT +++PD + R +I+ + ++ GF++ K + + E ++ YS+ + FF
Sbjct: 536 QLQRTLALIRPDAL-RSRRESIMSKIQEAGFEIAMSKEMHLTREQAEEFYSEHKDQEFFD 594
Query: 258 GLVKYMSSGPVVPMVWEGLNVVKTGRQMLG---ATNPADSQPGTIRGDLCIQVGR-NIIH 425
LV MSSGP++ + + ++ R MLG D P ++R ++ N +H
Sbjct: 595 TLVTNMSSGPMMALCLAREDAIEGWRGMLGPKEVEKAKDEAPESLRAQFQVEDSPINPLH 654
Query: 426 GSDSVESAKKEIGLWFTDKEVV 491
GSD+ E+A+KEI +F + V
Sbjct: 655 GSDTAENAEKEIQKFFPMQSTV 676
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 414 NIIHGSDSVESAKKEIGLWFTD 479
N +HG DS ESA +E+ +F D
Sbjct: 501 NAVHGCDSNESAARELAFFFPD 522
>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1373
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -1
Query: 334 RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 242
R VF T+ HT+ T G E +YF RP K+ R
Sbjct: 194 RAVFNTMVVLHTVLTKGEETLYFERPIKRPR 224
>SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)
Length = 908
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 334 RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 242
R VF T+ HT+ T G + +YF RP ++ R
Sbjct: 759 RAVFNTMVVLHTVLTKGEQTLYFERPIRRPR 789
>SB_43132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 334 RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 242
R VF T+ HT+ T G + +YF RP ++ R
Sbjct: 46 RAVFNTMVVLHTVLTKGEQTLYFERPIRRPR 76
>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -3
Query: 128 TTLYTIRLNHNKST---LTLFRHHEILLTCSINYTCTTA 21
TT YT+ ++ +T T H TC+ +YTCTT+
Sbjct: 149 TTSYTLTTSYTCTTSYTCTTSYTHTTSYTCTTSYTCTTS 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,601,082
Number of Sequences: 59808
Number of extensions: 391479
Number of successful extensions: 900
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -