Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b11r
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   4.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.3  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 27  LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 113
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 27  LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 113
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 27  LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 113
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 27  LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 113
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 27  LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 113
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 27  LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 113
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 305 GGGWIPSGYCSPRGYVHLPA 364
           GG   P GY   +G+VHL A
Sbjct: 77  GGLEEPKGYTLFKGFVHLGA 96


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 27  LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 113
           L G+Y   ++F    +V L  +V   HHR
Sbjct: 324 LLGSYFNCIMFMVASSVVLTVLVLNFHHR 352


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 27  LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 113
           L G+Y   ++F    +V L  +V   HHR
Sbjct: 324 LIGSYFNCIMFMVASSVVLTVLVLNFHHR 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,182
Number of Sequences: 438
Number of extensions: 2676
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)