Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b10r
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0)                   235   2e-62
SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0)                    95   5e-20
SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_42248| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)                28   6.9  
SB_56499| Best HMM Match : MFS_1 (HMM E-Value=0.29)                    27   9.1  
SB_55747| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56)                  27   9.1  
SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)               27   9.1  
SB_397| Best HMM Match : MFS_1 (HMM E-Value=0.16)                      27   9.1  
SB_47833| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_39196| Best HMM Match : Phage_GP20 (HMM E-Value=3.9)                27   9.1  
SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56)                  27   9.1  
SB_413| Best HMM Match : Phage_GP20 (HMM E-Value=3.9)                  27   9.1  

>SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
          Length = 119

 Score =  235 bits (575), Expect = 2e-62
 Identities = 106/116 (91%), Positives = 114/116 (98%)
 Frame = -3

Query: 550 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 371
           MK++YKEEH FEKR+AEGEKIR+KYPDRVPVIVEKAPKAR+GDLDKKKYLVPSDLTVGQF
Sbjct: 1   MKWEYKEEHPFEKRRAEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60

Query: 370 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 203
           YFLIRKRIHLRPEDALFFFVNNVIPPTSATMG LYQEHH+EDFFLYIA+SDE+VYG
Sbjct: 61  YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116


>SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
          Length = 140

 Score = 94.7 bits (225), Expect = 5e-20
 Identities = 48/115 (41%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
 Frame = -3

Query: 538 YKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKAR-LGDLDKKKYLVPSDLTVGQFYFL 362
           +K+  SF  R+ E   IR K+P ++PVIVE+  K + L  LDK K+LVP +LT+ QF  +
Sbjct: 14  FKQRKSFVSRRDEVAGIRAKFPSKIPVIVERYHKEKDLPLLDKTKFLVPQELTMSQFVTI 73

Query: 361 IRKRIHLRPEDALFFFVNN-VIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 200
           IR R+ L    A +  VNN  +   S TM  LY+E  DED FLY+ ++ + ++G+
Sbjct: 74  IRNRMSLSSTQAFYLIVNNKSLASMSMTMAELYREEKDEDGFLYMVYASQEMFGS 128


>SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 209 DIFVGKC-YV*KEIFIMVFLVERPHCCRCGWNDIVHEEEKCVFRPQVNTFPDQE 367
           D+ VG C Y      +   L +RP       +++V ++++ VF+P  +T  DQ+
Sbjct: 132 DLAVGYCQYDHLASVLTQLLTDRPEASTEILDELVRDKKRAVFKPNFDTIQDQQ 185


>SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 643

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 170 NYLKVNNLELISIDIFVGKCYV*KEIFIMVFLVERPHCCRCGWNDIVHEEEK 325
           N L+ NN +L +  +F G C+V K + IM FLV    C R   +  + +++K
Sbjct: 586 NCLEYNNTQL-AYTVF-GLCFVCKLVVIMGFLVSYLSCRRINKSTRLRQDDK 635


>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1455

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 469 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLR 338
           RV   + +     + + D K YL P D   G+FY L   +IH+R
Sbjct: 214 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYIL--PKIHIR 255


>SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 472 DRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 335
           +RV   + +     + + D K YL P D   G+FY L +   H  P
Sbjct: 81  ERVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 126


>SB_42248| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)
          Length = 736

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = -2

Query: 287 CNNGVSLPRTP**RFLSIHSIFRRKCLWKLIPNYSLSNS----FTLSDHMVKFNLSLRLK 120
           C N  SLP  P  +   + ++ +++C      +Y L  +    F+ SD  +   L L   
Sbjct: 383 CGNRGSLPPPPPGQLAKLLAVRQKQCEKYPTSHYMLKVAHLQYFSYSDSKINSKLKLNYV 442

Query: 119 LCIILWYFFIINWHIILYLS 60
           LC+  W     + H++  +S
Sbjct: 443 LCLNTWLSDQFDKHMVYIVS 462


>SB_56499| Best HMM Match : MFS_1 (HMM E-Value=0.29)
          Length = 274

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -2

Query: 194 PNYSLSNSFTLSDHMVKFNLSL-RLKLCIILWYFFIINWH-IILYLSSY 54
           P+   +++ T+S H+V F ++L  +K     +YFF    H ++++   Y
Sbjct: 172 PSVDFTSALTVSKHLVTFAVTLDHIKRFFTFFYFFDAECHNVVVFQGRY 220


>SB_55747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 469 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 335
           RV   + +     + + D K YL P D   G+FY L +   H  P
Sbjct: 158 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 202


>SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
          Length = 640

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 469 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 335
           RV   + +     + + D K YL P D   G+FY L +   H  P
Sbjct: 77  RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 121


>SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)
          Length = 417

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 469 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 335
           RV   + +     + + D K YL P D   G+FY L +   H  P
Sbjct: 34  RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 78


>SB_397| Best HMM Match : MFS_1 (HMM E-Value=0.16)
          Length = 394

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 469 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 335
           RV   + +     + + D K YL P D   G+FY L +   H  P
Sbjct: 324 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 368


>SB_47833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 469 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 335
           RV   + +     + + D K YL P D   G+FY L +   H  P
Sbjct: 232 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 276


>SB_39196| Best HMM Match : Phage_GP20 (HMM E-Value=3.9)
          Length = 201

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 469 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 335
           RV   + +     + + D K YL P D   G+FY L +   H  P
Sbjct: 131 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 175


>SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
          Length = 785

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 469 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 335
           RV   + +     + + D K YL P D   G+FY L +   H  P
Sbjct: 450 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 494


>SB_413| Best HMM Match : Phage_GP20 (HMM E-Value=3.9)
          Length = 179

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 469 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 335
           RV   + +     + + D K YL P D   G+FY L +   H  P
Sbjct: 109 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,141,198
Number of Sequences: 59808
Number of extensions: 344473
Number of successful extensions: 789
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)