Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b10r
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23511-11|AAC46797.1| 123|Caenorhabditis elegans Lc3, gabarap a... 213 8e-56
AF326943-1|AAG49393.1| 123|Caenorhabditis elegans GABA A recept... 213 8e-56
Z69385-5|CAA93421.1| 130|Caenorhabditis elegans Hypothetical pr... 83 1e-16
Z81064-1|CAB02962.2| 655|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z83218-4|CAB05690.2| 706|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z70780-6|CAA94823.1| 614|Caenorhabditis elegans Hypothetical pr... 27 8.0
AF026204-2|AAB71251.2| 247|Caenorhabditis elegans Hypothetical ... 27 8.0
AF000298-1|AAC48257.2| 229|Caenorhabditis elegans Pcna (prolife... 27 8.0
>U23511-11|AAC46797.1| 123|Caenorhabditis elegans Lc3, gabarap and
gate-16 familyprotein 1 protein.
Length = 123
Score = 213 bits (520), Expect = 8e-56
Identities = 96/116 (82%), Positives = 108/116 (93%)
Frame = -3
Query: 550 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 371
MK+ YKEE++FEKR+AEG+KIRRKYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQF
Sbjct: 1 MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQF 60
Query: 370 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 203
YFLIRKRI LRPEDALFFFVNNVIP T TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 61 YFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116
>AF326943-1|AAG49393.1| 123|Caenorhabditis elegans GABA A
receptor-associated protein protein.
Length = 123
Score = 213 bits (520), Expect = 8e-56
Identities = 96/116 (82%), Positives = 108/116 (93%)
Frame = -3
Query: 550 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 371
MK+ YKEE++FEKR+AEG+KIRRKYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQF
Sbjct: 1 MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQF 60
Query: 370 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 203
YFLIRKRI LRPEDALFFFVNNVIP T TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 61 YFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116
>Z69385-5|CAA93421.1| 130|Caenorhabditis elegans Hypothetical
protein ZK593.6 protein.
Length = 130
Score = 83.4 bits (197), Expect = 1e-16
Identities = 39/114 (34%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Frame = -3
Query: 538 YKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKAR-LGDLDKKKYLVPSDLTVGQFYFL 362
+KE F +R+ + E+IR + P++VPVI+E+ R L +D+ K+LVP +TV + +
Sbjct: 17 FKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSI 76
Query: 361 IRKRIHLRPEDALFFFVN-NVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 203
+R+R+ L P+ A F VN + S +M +LY + D D F+Y+ ++ + +G
Sbjct: 77 VRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130
>Z81064-1|CAB02962.2| 655|Caenorhabditis elegans Hypothetical
protein F16B12.1 protein.
Length = 655
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 469 DLDISCGFFRPQPFSSQMNVL-LCIGISC*YFITHCNFR 582
D D SC FF + FSS+ +L L C Y H F+
Sbjct: 364 DPDCSCNFFNDKTFSSEGKMLNLSFPAHCAYIYCHFQFK 402
>Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical
protein F47B8.5 protein.
Length = 579
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 478 ISCGFFRPQPFSSQMNVLLCIGISC*YFITHCNF 579
I G P SS MN+LL +S F HC +
Sbjct: 353 IENGIISPSNSSSSMNLLLIFAVSTLIFSAHCQY 386
>Z83218-4|CAB05690.2| 706|Caenorhabditis elegans Hypothetical
protein C31A11.7 protein.
Length = 706
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 128 RLKLCIILWYFFIINWHIILYLSSYE*YKTFQ 33
RL C + +FF + W++ + SS Y TFQ
Sbjct: 606 RLSYCAYIVHFFTLFWYLNINDSSMHFYSTFQ 637
>Z70780-6|CAA94823.1| 614|Caenorhabditis elegans Hypothetical
protein F46B6.7 protein.
Length = 614
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 265 QEHHDEDFFLYIAFSDENVYGN*FQIIHFQIVLHYLTI 152
+E D F L F N GN +IIH ++H+L +
Sbjct: 296 REREDTSFQLQCIFCRYNARGNRSKIIHHLYMIHHLNL 333
>AF026204-2|AAB71251.2| 247|Caenorhabditis elegans Hypothetical
protein C30E1.6 protein.
Length = 247
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -2
Query: 173 SFTLSDHMVKFNLSLRLKLCIILWYFFII 87
SFT+ + + F++ L KL +++++FF I
Sbjct: 116 SFTIPNFSISFSIFLWAKLQVLIYFFFYI 144
>AF000298-1|AAC48257.2| 229|Caenorhabditis elegans Pcna
(proliferating cell nuclearantigen) homolog protein 1
protein.
Length = 229
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 556 INMKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVE 449
+N+ F K + F K A +++R + VPV+VE
Sbjct: 170 VNVNFSIKYMNQFTKATALSDRVRLSLCNDVPVVVE 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,293,294
Number of Sequences: 27780
Number of extensions: 281260
Number of successful extensions: 1038
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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