Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b10f
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1208 - 31750493-31750587,31750733-31750851,31751425-317514... 152 2e-37
07_03_0566 - 19572410-19572504,19572590-19572708,19573109-195731... 149 2e-36
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 94 6e-20
11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834 60 1e-09
02_04_0068 - 19442643-19442734,19442824-19442885,19443013-194430... 60 2e-09
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277... 29 2.1
07_03_0039 - 12718972-12720699 29 2.1
10_08_0326 - 16775730-16775888,16776109-16776236,16776404-16776428 28 4.8
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972... 28 6.3
06_01_0417 - 2972877-2973876,2973946-2974851,2975823-2976616,297... 27 8.4
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114... 27 8.4
>04_04_1208 -
31750493-31750587,31750733-31750851,31751425-31751477,
31751567-31751622,31752690-31752726
Length = 119
Score = 152 bits (369), Expect = 2e-37
Identities = 65/115 (56%), Positives = 90/115 (78%)
Frame = +3
Query: 66 KFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFY 245
K +K +H+ E+R+AE +IR KY DR+PVIVEKA ++ + D+DKKKYLVP+DLTVGQF
Sbjct: 3 KSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
Query: 246 FLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 410
+++RKRI L PE A+F FV N +PPT+A M ++Y+E+ DED FLY+ +S EN +G
Sbjct: 63 YVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
>07_03_0566 -
19572410-19572504,19572590-19572708,19573109-19573161,
19573251-19573306,19574297-19574340,19576767-19576816,
19577393-19577398,19577675-19578103
Length = 283
Score = 149 bits (360), Expect = 2e-36
Identities = 64/113 (56%), Positives = 88/113 (77%)
Frame = +3
Query: 75 YKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLI 254
+K EH E+R+AE +IR KY DR+PVIVEKA K + ++DKKKYLVP+DLTVGQF +++
Sbjct: 170 FKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVV 229
Query: 255 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 413
RKRI L PE A+F FV N +PPT++ M ++Y+E+ DED FLY+ +S EN +G+
Sbjct: 230 RKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGS 282
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 94.3 bits (224), Expect = 6e-20
Identities = 39/69 (56%), Positives = 54/69 (78%)
Frame = +3
Query: 204 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYI 383
+YLVP+DLTVGQF +++RKRI L E A+F FV N +PPT+A M ++Y+E+ DED FLY+
Sbjct: 1884 RYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYM 1943
Query: 384 AFSDENVYG 410
+S EN +G
Sbjct: 1944 TYSGENTFG 1952
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +3
Query: 96 EKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKK 206
E+R+AE +IR KYPDR+PVIVEKA ++ + D+DKKK
Sbjct: 1806 ERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKK 1842
>11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834
Length = 273
Score = 60.5 bits (140), Expect = 1e-09
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Frame = +3
Query: 102 RKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPE 281
R+ EGE+ RR + VIVEK ++ L +++K+K +HL P
Sbjct: 192 REEEGERERR---GKGQVIVEKFSRSNLPEMEKRK-------------------LHLSPG 229
Query: 282 DALFFFVNNVIPPTSATMGSLYQEHHDE-DFFLYIAFSDENVYG 410
ALF FVNN +P T+ MGS+Y+ + DE D FLY+ +S E +G
Sbjct: 230 TALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 273
>02_04_0068 -
19442643-19442734,19442824-19442885,19443013-19443067,
19443290-19443344
Length = 87
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +3
Query: 255 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDE-DFFLYIAFSDENVYG 410
++++HL P ALF FVNN +P T+ MGS+Y+ + DE D FLY+ +S E +G
Sbjct: 35 KRKLHLPPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 87
>09_06_0199 +
21526872-21527250,21527431-21527594,21527673-21527736,
21528001-21528134,21528302-21528385,21528526-21528600,
21528683-21528754,21528852-21528925,21529185-21529282,
21529355-21529464,21529794-21529862,21529944-21530018,
21530519-21530611,21530690-21530769,21530877-21530976,
21531150-21531586,21531676-21531706,21532873-21533822,
21533982-21534201
Length = 1102
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 78 KEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLV 215
KEE + EK++ KI++ P R EK P G K+ ++V
Sbjct: 654 KEEPTSEKKQPVSAKIKKTVPKRTSGTKEKKPDTDQGGKRKRNWMV 699
>07_03_0039 - 12718972-12720699
Length = 575
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 213 VPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNV-IPPTS 326
VPS L F L+R+ + P + L FF+ ++ +PPT+
Sbjct: 80 VPSSLRTSAFPSLLRRHLAFHPLNELPFFLESIGLPPTT 118
>10_08_0326 - 16775730-16775888,16776109-16776236,16776404-16776428
Length = 103
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -1
Query: 462 IWSDSVKLFESE*FGINFHRHFRRKMLCIERNLHHGVLGRETPLLQMWVE*HCSR-RRKV 286
IW + +S+ +G+NF + F+ + ++ + LG+ T ++ VE HC R ++
Sbjct: 22 IWKSASLKRKSKRYGVNFFKGFKATVNFLKLGRNPISLGKTTEMIGKKVE-HCCRWIQEE 80
Query: 285 RLQAAGEYVSGSRSRTG 235
+ E + G S G
Sbjct: 81 EIAGIAESLQGGGSGAG 97
>09_02_0475 +
9724676-9724936,9725518-9726216,9726273-9726596,
9726900-9727847
Length = 743
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 404 LWKLIPNYSLSNSFTLSDHMVKFNLSLRLKLCII 505
LW+L+ +SL S + +++SL LK C +
Sbjct: 335 LWELVERHSLEREVFSSFKQIYYDMSLMLKSCFL 368
>06_01_0417 -
2972877-2973876,2973946-2974851,2975823-2976616,
2977887-2977977,2978305-2978384
Length = 956
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 302 EQCHSTHICNNGVSLPRTP**RFLSIHSIFRRKCLWKLIPNYSLSNSFTLS 454
E+ ++ +C+NG +L R LSIHS + K N S + SFT+S
Sbjct: 562 EENFASFLCDNGSTLASHDKIRRLSIHSSYNSS--QKTSANVSHARSFTMS 610
>05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,
1147544-1147645,1147767-1147889,1147996-1148622,
1148710-1148883,1148965-1149181,1149312-1149394,
1149478-1149573,1149676-1149724,1149850-1150088,
1150547-1150618,1150694-1150804,1150930-1151282,
1151377-1151464,1151691-1151789,1151860-1151991,
1152119-1152222,1153179-1153215,1153334-1153367,
1153451-1153467
Length = 1006
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 383 SIFRRKCLWKLIPNYSLSNSFTLSDHMVKFN 475
SI+ ++ KLI N+SL+ + + DH + FN
Sbjct: 933 SIYHQQIRPKLISNFSLAWNLYVKDHPIDFN 963
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,787,135
Number of Sequences: 37544
Number of extensions: 277686
Number of successful extensions: 727
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -