Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b09r
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    29   0.54 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   0.72 
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.2  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    27   2.9  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   3.8  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    26   5.0  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   5.0  
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar...    26   5.0  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   5.0  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    26   5.0  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    26   6.7  

>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -2

Query: 749 MPSTLSTSVKKNSRALLT--VTRSVNHVLTTSRSL*QSILNLMLPLTPSS 606
           +PS++++S K NSR+ L+  +   ++++L  + S   S L + LP  P S
Sbjct: 253 LPSSITSSAKSNSRSSLSQKIRNYISNMLFDAISYTDSCLAIHLPFIPES 302


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 306  VFVYPYEPTPKESEPFKSVVPDNKPFGYP 220
            + VY + P   +SE F +VV DN    YP
Sbjct: 4194 ILVYQHLPDSSQSETFLNVVTDNSAVDYP 4222


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -1

Query: 609 VKMFLGPKYDENGFPFSLEDNWMNFY----ELDWFVQKVNPGQSQI 484
           +++FL P    +G  +  +D W++FY    E DW     N G + +
Sbjct: 338 LRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -1

Query: 519 FVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIYK--LLDQGKIPTDMFNSSDTMPSRLML 346
           F+  VNP ++  TR +       ++SLPMA  Y    L   +    +    +  P   + 
Sbjct: 258 FISSVNPLEADDTRETLSEGALVQESLPMAYSYSDTNLVVSRDSFTLTGDDNLFPEGGLR 317

Query: 345 PKGTYDG 325
           P  T DG
Sbjct: 318 PANTIDG 324


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -1

Query: 525 DWFVQKVNPGQSQITRSSTDFAFFKEDSLPMAEI 424
           DW + K+ P   ++T    D  FF  +  P   +
Sbjct: 82  DWVIVKLGPSSGRVTGCEIDTTFFNGNHAPEVSV 115


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = +1

Query: 304 YKQLEGESIVCTLRQHQPRRHSVR------GVEHVSRNLSLVQELVDFGHR 438
           +K L G       R+   RRH V       G+  ++RN S+ + L+D  +R
Sbjct: 261 HKVLHGVMFDLAEREGTRRRHQVDTIVEGVGINRMTRNFSIAEPLIDMAYR 311


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +2

Query: 218 NG*PNGLLSGTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVG 397
           +G  +  L  + + N +++   G+Y   N NS   N  +    S SL+G+ S  LN S G
Sbjct: 550 SGMASSFLGSSGNNNNNNNSNSGNYN--NNNSGNNNQQHQQSSS-SLQGLASSFLNSSSG 606


>SPAC3H5.04 |aar2||U5 snRNP-associated protein
           Aar2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 666 HKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNW 544
           H+    +ID  S   T ++ K  L   YDEN +PF    +W
Sbjct: 58  HEDMKYSIDFDSKSETASLQK--LDVLYDENFYPFESTKDW 96


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 8/43 (18%)
 Frame = -1

Query: 693 YKVRQPRLNHKP--FTVTIDIKSDVATNAV---VKM---FLGP 589
           Y+V++PRLN +P  +T   ++++ +A+N V   VK+   FLGP
Sbjct: 554 YEVQRPRLNDRPPLYTARDEMETLLASNKVTDWVKLSEFFLGP 596


>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 267 EPFKSVVPDNKPFGYPFDRPVLP 199
           E  KS VPD  P G+P D P+ P
Sbjct: 19  EGLKSSVPDASPKGHP-DSPIFP 40


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = +2

Query: 404 PWSKSL*ISAIGKE-----SSLKNAKSVDERVI*DWPGLTFCTNQSSS*KFIQLSSRLKG 568
           PWS++   S  G       +S+K+A  +  + I +   L    N +   KF       KG
Sbjct: 5   PWSRNFLCSCRGFSVCTPYASIKSASELALKNISELQALQKIQNHTEKLKFFSSKLHNKG 64

Query: 569 KPFSSYLG 592
           +PF+  LG
Sbjct: 65  EPFTLQLG 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,053
Number of Sequences: 5004
Number of extensions: 61830
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)